plannotate annotation (#23)

* plannotate annotation

* add type to allow Union of classes

* multivalued report

Author: manulera

project/excel/shareyourcloning_linkml.xlsx

@@ -12,6 +12,23 @@ type AddGeneIdSource
     addgeneSequenceType: AddGeneSequenceType
   }
 
+type AnnotationReport
+  {
+    type: String
+  }
+
+type AnnotationSource
+  {
+    id: Integer!
+    input: [Sequence]
+    output: Sequence
+    type: String
+    outputName: String
+    annotationTool: AnnotationTool!
+    annotationToolVersion: String
+    annotationReport: [AnnotationReport]
+  }
+
 type AssemblyFragment
   {
     sequence: Sequence!
@@ -199,6 +216,25 @@ type PCRSource
     addPrimerFeatures: Boolean
   }
 
+type PlannotateAnnotationReport
+  {
+    type: String
+    sseqid: String
+    startLocation: Integer
+    endLocation: Integer
+    strand: Integer
+    percentIdentity: Float
+    fullLengthOfFeatureInDb: Integer
+    lengthOfFoundFeature: Integer
+    percentMatchLength: Float
+    fragment: Boolean
+    database: String
+    feature: String
+    type: String
+    description: String
+    sequence: String
+  }
+
 type PolymeraseExtensionSource
   {
     id: Integer!

project/graphql/shareyourcloning_linkml.graphql

@@ -1,7 +1,7 @@
 {
    "comments": {
       "description": "Auto generated by LinkML jsonld context generator",
-      "generation_date": "2024-11-22T18:08:08",
+      "generation_date": "2024-11-26T16:51:08",
       "source": "shareyourcloning_linkml.yaml"
    },
    "@context": {
@@ -29,6 +29,21 @@
          },
          "@id": "addgene_sequence_type"
       },
+      "annotation_report": {
+         "@type": "@id",
+         "@id": "annotation_report"
+      },
+      "annotation_tool": {
+         "@context": {
+            "text": "skos:notation",
+            "description": "skos:prefLabel",
+            "meaning": "@id"
+         },
+         "@id": "annotation_tool"
+      },
+      "annotation_tool_version": {
+         "@id": "annotation_tool_version"
+      },
       "left_location": {
          "@type": "@id",
          "@id": "left_location"
@@ -146,6 +161,49 @@
          "@type": "xsd:boolean",
          "@id": "add_primer_features"
       },
+      "database": {
+         "@id": "database"
+      },
+      "Description": {
+         "@id": "Description"
+      },
+      "end_location": {
+         "@type": "xsd:integer",
+         "@id": "end_location"
+      },
+      "Feature": {
+         "@id": "Feature"
+      },
+      "fragment": {
+         "@type": "xsd:boolean",
+         "@id": "fragment"
+      },
+      "full_length_of_feature_in_db": {
+         "@type": "xsd:integer",
+         "@id": "full_length_of_feature_in_db"
+      },
+      "length_of_found_feature": {
+         "@type": "xsd:integer",
+         "@id": "length_of_found_feature"
+      },
+      "percent_identity": {
+         "@type": "xsd:float",
+         "@id": "percent_identity"
+      },
+      "percent_match_length": {
+         "@type": "xsd:float",
+         "@id": "percent_match_length"
+      },
+      "sseqid": {
+         "@id": "sseqid"
+      },
+      "start_location": {
+         "@type": "xsd:integer",
+         "@id": "start_location"
+      },
+      "Type": {
+         "@id": "Type"
+      },
       "repository_id": {
          "@id": "repository_id"
       },
@@ -210,6 +268,12 @@
       "AddGeneIdSource": {
          "@id": "AddGeneIdSource"
       },
+      "AnnotationReport": {
+         "@id": "AnnotationReport"
+      },
+      "AnnotationSource": {
+         "@id": "AnnotationSource"
+      },
       "AssemblyFragment": {
          "@id": "AssemblyFragment"
       },
@@ -261,6 +325,9 @@
       "PCRSource": {
          "@id": "PCRSource"
       },
+      "PlannotateAnnotationReport": {
+         "@id": "PlannotateAnnotationReport"
+      },
       "PolymeraseExtensionSource": {
          "@id": "PolymeraseExtensionSource"
       },