OpenCloning_backend/.pre-commit-config.yaml at master · OpenCloning/OpenCloning_backend · GitHub

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repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.6.0
    hooks:
      - id: trailing-whitespace
      - id: check-yaml
      - id: end-of-file-fixer
      - id: double-quote-string-fixer
  - repo: https://github.com/psf/black
    rev: 24.4.0
    hooks:
      - id: black
  - repo: https://github.com/PyCQA/flake8
    rev: 7.0.0
    hooks:
      - id: flake8
  # Hook to remove metadata changes from notebooks to avoid diff contamination
  - repo: local
    hooks:
      - id: nbstripout
        name: nbstripout with keep-output
        entry: |
          python -m nbstripout --keep-output $@
        language: system
        files: \.ipynb$
        exclude: packages/opencloning/tests/
  # Hook to ensure that httpx is only imported in the httpClient.py file
  - repo: local
    hooks:
      - id: httpx-import-check
        name: httpx-import-check
        entry: python scripts/check_httpx_imports.py
        language: system
        files: \.py$
        exclude: |
            (?x)^(
                packages/opencloning/tests/.*|
                scripts/.*|
            )$
  # Hook to ensure that primer3 is only imported in the primer3_functions.py file
  # This is to centralize how the settings etc. are handled.
  - repo: local
    hooks:
      - id: primer3-import-check
        name: primer3-import-check
        entry: python scripts/check_primer3_imports.py
        language: system
        files: \.py$
        exclude: packages/opencloning/tests/
  - repo: local
    hooks:
      - id: deptry
        name: deptry
        entry: uv run deptry --config packages/opencloning/pyproject.toml packages/opencloning/src
        language: system
        pass_filenames: false
        files: |
            (?x)^(
                packages/opencloning/src/.*|
                packages/opencloning/pyproject.toml|
                pyproject.toml
            )$
        exclude: |
            (?x)^(
                packages/opencloning/tests/.*|
                packages/opencloning-db/tests/.*|
            )$
  - repo: local
    hooks:
      - id: deptry-opencloning-db
        name: deptry (opencloning-db)
        entry: uv run deptry --config packages/opencloning-db/pyproject.toml packages/opencloning-db/src
        language: system
        pass_filenames: false
        files: |
            (?x)^(
                packages/opencloning-db/src/.*|
                packages/opencloning-db/pyproject.toml|
                pyproject.toml
            )$