perf: 1.76x speedup via SIMD, allocation elimination, and lookup tables #89
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| name: fastp ci | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-24.04 | |
| - macos-14 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: checkout with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Get number of CPU cores | |
| uses: SimenB/github-actions-cpu-cores@v2 | |
| id: cpu-cores | |
| - name: install build dependencies (Ubuntu) | |
| run: sudo apt update && sudo apt install -y build-essential nasm cmake | |
| if: runner.os == 'Linux' | |
| - name: install build dependencies (macOS) | |
| run: brew install cmake nasm | |
| if: runner.os == 'macOS' | |
| - name: make fastp | |
| run: make -j ${{ steps.cpu-cores.outputs.count }} | |
| - name: test | |
| run: ./fastp --version | |
| - name: test run | |
| run: ./fastp -i testdata/R1.fq -o /dev/null |