DOIs

[maxkfranz]

See: https://www.crkn-rcdr.ca/en/about-crkn

[jvwong]

Just noting that as of now, Editors at eLife and Nature Springer have explicitly asked about minting DOIs. In practice, this enables them to associate data/records with articles via CrossRef.

[jvwong]

U of T Dataverse (Borealis)

Notes from webinar (April 4, 2024)

Host: Jasmine Lefresne (Data Librarian)

• Free space where U of T staff can deposit and share research data
• Considerations
  • Individual file < 5 GB
  • Servers located on site @ U of T
• Access control
  • Open or restricted sharing
    • Restricted
      • Contact (me) can manually enable access through the system (email)
      • Terms of access text field available
  • Embargo
    • Set access date
    • Dataset always visible
  • Removal
    • De-accession dataset (lose access) but not “delete”
  • Permissions
    • Users and groups (Borealis/Dataverse account required)
• Indexing
  • Discoverable via Google Datasets, DataCite
• Persistent identifiers
  • Assigned DOI at published dataset level
  • QUESTION: All versions are listed under the same DOI
• Versioning
  • Per-dataset; Must republish
  • Record details associated with each version (e.g. file deleted, added)
  • Previous versions are available, listed together
  • Restricted access can be applied retroactively
• Admin
  • Contact owner on dataset homepage
• Hierarchical organization
  • Dataverse Collection → Dataset → File(s), Documentation
  • Dataverse Collection
    • Parent Container - e.g. lab or project
    • Imposes constraints on dataset features
      • Identifier (https:/borealis.ca/dataverse/<id>
      • Alternative URL etc.
  • Dataset
    • Sections: Files, metadata, terms, versions
    • Fields: Host Dataverse, License; Title, Author, Point of contact, Description, Related publication, keywords/Controlled vocab
    • Metadata
      • Curator/contributor attribution
      • Related materials and datasets
  • File
    • metadata: tags, provenance
  • **My Question: No limit to number of Files and Datasets that researchers can submit to the service (**Subject to future usage constraints)
• Demo
  • Sandbox, no publication DOI
• Webservices API available

[jvwong]

Mockups of Biofactoid Doc in Repositories

Showing demo versions of Biofactoid records in select repositories, namely those that mint DOIs.

Biofactoid Document

LD Motif Recognition by Talin: Structure of the Talin-DLC1 Complex. Structure 24 (2016)

NDex

The NDEx Project provides an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.

Pratt et al. NDEx, the Network Data Exchange. Cell Syst. Vol. 1, Issue 4: 302-305 (2015).

Borealis - The Canadian Dataverse Repository

Borealis, the Canadian Dataverse Repository, is a bilingual, multidisciplinary, secure, Canadian research data repository, supported by academic libraries and research institutions across Canada. Borealis supports open discovery, management, sharing, and preservation of Canadian research data.

Collection

Dataset

Dataset: Metadata