update changelog and docs for v1.3 (#7110)

part of #7017
fixes #7112

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: Wenqi Li <[email protected]>

Author: wyli

CHANGELOG.md

@@ -5,7 +5,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
 ## [Unreleased]
 
-## [1.3.0] - 2023-10-06
+## [1.3.0] - 2023-10-12
 ### Added
 * Intensity transforms `ScaleIntensityFixedMean` and `RandScaleIntensityFixedMean` (#6542)
 * `UltrasoundConfidenceMapTransform` used for computing confidence map from an ultrasound image (#6709)
@@ -39,6 +39,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 * Support str type annotation to `device` in `ToTensorD` (#6737)
 * Improve logging message and file name extenstion in `DataAnalyzer` for `Auto3DSeg` (#6758)
 * Set `data_range` as a property in `SSIMLoss` (#6788)
+* Unify environment variable access (#7084)
 * `end_lr` support in `WarmupCosineSchedule` (#6662)
 * Add `ClearML` as optional dependency (#6827)
 * `yandex.disk` support in `download_url` (#6667)
@@ -52,6 +53,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 * Fix mismatched shape in `Spacing` (#6912)
 * Avoid FutureWarning in `CropForeground` (#6934)
 * Fix `Lazy=True` ignored when using `Dataset` call (#6975)
+* Shape check for arbitrary types for DataStats (#7082)
 #### data
 * Fix wrong spacing checking logic in `PydicomReader` and broken link in `ITKReader` (#6660)
 * Fix boolean indexing of batched `MetaTensor` (#6781)
@@ -65,6 +67,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 #### metrics and losses
 * Fixed bug in `GeneralizedDiceLoss` when `batch=True` (#6775)
 * Support for `BCEWithLogitsLoss` in `DiceCELoss` (#6924)
+* Support for `weight` in Dice and related losses (#7098)
 #### networks
 * Use `np.prod` instead of `np.product` (#6639)
 * Fix dimension issue in `MBConvBlock` (#6672)
@@ -87,8 +90,10 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 * Bundle syntax `#` as alias of `::` (#6955)
 * Fix bundle download naming issue (#6969, #6963)
 * Simplify the usage of `ckpt_export` (#6965)
+* `update_kwargs` in `monai.bundle.script` for merging multiple configs (#7109)
 #### engines and handlers
 * Added int options for `iteration_log` and `epoch_log` in `TensorBoardStatsHandler` (#7027)
+* Support to run validator at training start (#7108)
 #### misc.
 * Fix device fallback error in `DataAnalyzer` (#6658)
 * Add int check for  `current_mode` in `convert_applied_interp_mode` (#6719)
@@ -104,6 +109,8 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 * Add type check to avoid comparing a np.array with a string in `_check_kwargs_are_present` (#6624)
 * Fix md5 hashing with FIPS mode (#6635)
 * Capture failures from Auto3DSeg related subprocess calls (#6596)
+* Code formatting tool for user-specified directory (#7106)
+* Various docstring fixes
 ### Changed
 * Base Docker image upgraded to `nvcr.io/nvidia/pytorch:23.08-py3` from `nvcr.io/nvidia/pytorch:23.03-py3`
 ### Deprecated
@@ -112,6 +119,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 * `workflow` in `BundleWorkflow` in favor of `workflow_type`(#6768)
 * `pos_embed` in `PatchEmbeddingBlock` in favor of `proj_type`(#6986)
 * `net_name` and `net_kwargs` in `download` in favor of `model`(#7016)
+* `img_size` parameter in SwinUNETR (#7093)
 ### Removed
 * `pad_val`, `stride`, `per_channel` and `upsampler` in `OcclusionSensitivity` (#6642)
 * `compute_meaniou` (#7019)

tests/test_swin_unetr.py

@@ -24,7 +24,7 @@
 from monai.networks.nets.swin_unetr import PatchMerging, PatchMergingV2, SwinUNETR, filter_swinunetr
 from monai.networks.utils import copy_model_state
 from monai.utils import optional_import
-from tests.utils import assert_allclose, skip_if_downloading_fails, skip_if_quick, testing_data_config
+from tests.utils import assert_allclose, skip_if_downloading_fails, skip_if_no_cuda, skip_if_quick, testing_data_config
 
 einops, has_einops = optional_import("einops")
 
@@ -108,6 +108,7 @@ def test_patch_merging(self):
 
     @parameterized.expand(TEST_CASE_FILTER)
     @skip_if_quick
+    @skip_if_no_cuda
     def test_filter_swinunetr(self, input_param, key, value):
         with skip_if_downloading_fails():
             with tempfile.TemporaryDirectory() as tempdir: