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AttributeError: module 'zarr.storage' has no attribute 'DirectoryStore' #8298

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KumoLiu opened this issue Jan 14, 2025 · 2 comments · Fixed by #8299
Open

AttributeError: module 'zarr.storage' has no attribute 'DirectoryStore' #8298

KumoLiu opened this issue Jan 14, 2025 · 2 comments · Fixed by #8299
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bug Something isn't working

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@KumoLiu
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KumoLiu commented Jan 14, 2025 

Traceback (most recent call last):
  File "/home/runner/work/MONAI/MONAI/tests/runner.py", line 135, in <module>
    tests = unittest.TestLoader().loadTestsFromNames(cases)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/unittest/loader.py", line 232, in loadTestsFromNames
    suites = [self.loadTestsFromName(name, module) for name in names]
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/unittest/loader.py", line 232, in <listcomp>
    suites = [self.loadTestsFromName(name, module) for name in names]
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/unittest/loader.py", line 162, in loadTestsFromName
    module = __import__(module_name)
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 157, in <module>
    dict(merged_shape=TENSOR_4x4.shape, store=zarr.storage.DirectoryStore("test.zarr")),
                                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'DirectoryStore'
@KumoLiu
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KumoLiu commented Jan 14, 2025 •
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May related to the new release: https://pypi.org/project/zarr/3.0.0/

zarr-developers/zarr-python#2699

@KumoLiu KumoLiu added the bug Something isn't working label Jan 14, 2025
KumoLiu added a commit to KumoLiu/MONAI that referenced this issue Jan 14, 2025
@KumoLiu
fix Project-MONAI#8298
b49ce64 
Signed-off-by: YunLiu <[email protected]>
@KumoLiu KumoLiu mentioned this issue Jan 14, 2025
Merged
7 tasks
KumoLiu added a commit to KumoLiu/MONAI that referenced this issue Jan 14, 2025
@KumoLiu
fix Project-MONAI#8298
a777268 
Signed-off-by: YunLiu <[email protected]>
@KumoLiu
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KumoLiu commented Jan 20, 2025

More deprecated usage found here: https://github.com/Project-MONAI/MONAI/actions/runs/12862267071/job/35856920175

Error Logs 

======================================================================
ERROR: test_zarr_avg_merger_finalized_error (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_finalized_error)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 314, in test_zarr_avg_merger_finalized_error
    merger = ZarrAvgMerger(merged_shape=(1, 3, 2, 3))
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_00 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_00)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_01 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_01)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_02 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_02)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_03 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_03)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_04 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_04)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_05 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_05)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_06 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_06)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_07 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_07)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_08 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_08)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_09 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_09)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_10 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_10)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_11 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_11)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 255, in __init__
    self.output = zarr.empty(
                  ^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/api/synchronous.py", line 918, in empty
    return Array(sync(async_api.empty(shape, **kwargs)))
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/core/sync.py", line 142, in sync
    raise return_result
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/core/sync.py", line 98, in _runner
    return await coro
           ^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/api/asynchronous.py", line 1084, in empty
    return await create(shape=shape, fill_value=None, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/api/asynchronous.py", line 1044, in create
    return await AsyncArray._create(
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/zarr/core/array.py", line 603, in _create
    raise ValueError(
ValueError: compressor cannot be used for arrays with zarr_format 3. Use bytes-to-bytes codecs instead.

======================================================================
ERROR: test_zarr_avg_merger_patches_12 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_12)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_13 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_13)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 292, in test_zarr_avg_merger_patches
    arguments["compressor"] = zarr.codec_registry[arguments["compressor"].lower()]()
                              ^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr' has no attribute 'codec_registry'

======================================================================
ERROR: test_zarr_avg_merger_patches_14 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_14)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 292, in test_zarr_avg_merger_patches
    arguments["compressor"] = zarr.codec_registry[arguments["compressor"].lower()]()
                              ^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr' has no attribute 'codec_registry'

======================================================================
ERROR: test_zarr_avg_merger_patches_15 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_15)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 292, in test_zarr_avg_merger_patches
    arguments["compressor"] = zarr.codec_registry[arguments["compressor"].lower()]()
                              ^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr' has no attribute 'codec_registry'

======================================================================
ERROR: test_zarr_avg_merger_patches_16 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_16)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

======================================================================
ERROR: test_zarr_avg_merger_patches_17 (tests.test_zarr_avg_merger.ZarrAvgMergerTests.test_zarr_avg_merger_patches_17)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/parameterized/parameterized.py", line 620, in standalone_func
    return func(*(a + p.args), **p.kwargs, **kw)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/tests/test_zarr_avg_merger.py", line 299, in test_zarr_avg_merger_patches
    merger = ZarrAvgMerger(**arguments)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/utils/module.py", line 477, in _wrapper
    return call_obj(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/MONAI/MONAI/monai/inferers/merger.py", line 249, in __init__
    self.value_store = zarr.storage.TempStore() if value_store is None else value_store
                       ^^^^^^^^^^^^^^^^^^^^^^
AttributeError: module 'zarr.storage' has no attribute 'TempStore'

----------------------------------------------------------------------

@KumoLiu KumoLiu reopened this Jan 20, 2025
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Using LocalStore in Zarr v3 KumoLiu/MONAI
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@KumoLiu