v0.9.0

What's Changed

• 823 documentation dia modules by @mlocardpaulet in #826
• Check presence runs by @RobbinBouwmeester in #825
• Update DIA notebook - manuscript by @rodvrees in #829
• Add defaults to some DIA-NN params by @rodvrees in #830
• Update 2-quant-lfq-ion-dda.md by @mlocardpaulet in #831
• Update 8-quant-lfq-precursor-dda-Astral.md by @mlocardpaulet in #832
• 🎨 fix issues highlighted by pylint by @enryH in #776
• 🚚 📝 document session state keys, and refactor app into modules by @enryH in #784
• Update analysis notebook for DDA figures by @Cajac102 in #837
• Parse min max mz for DIA modules by @rodvrees in #836

Full Changelog: v0.8.29...v0.9.0

v0.8.29

What's Changed

• Update 5-quant-lfq-ion-dia-diapasef.md with links to data by @rodvrees in #809
• Update 3-module-proposal.md by @mlocardpaulet in #812
• Update 5-contributors.rst by @RobbinBouwmeester in #818
• Update reviewing-new-point-pr.rst to contain info on locally submitte… by @rodvrees in #822
• Update 7-quant-lfq-precursor-dia-Astral_2Th.md by @brvpuyve in #819
• 813 update module list and links in documentation by @mlocardpaulet in #816
• Update 5-quant-lfq-ion-dia-diapasef.md by @brvpuyve in #815
• Update parse_settings_peaks.toml by @brvpuyve in #814
• 🐛 address accessing pd.Series with integers by @enryH in #807
• make file for documenting what parameters are parsed for public submi… by @mlocardpaulet in #751
• Add statistics widgets to front page by @rodvrees in #761
• First test_collapsable sidebar by @RobbinBouwmeester in #803

Full Changelog: v0.8.28...v0.8.29

v0.8.28

What's Changed

• Update proteobench-contributing-institutes.png by @RobbinBouwmeester in #805

Full Changelog: v0.8.27...v0.8.28

v0.8.27

What's Changed

• Sort download based on ID by @RobbinBouwmeester in #800
• Update plot_quant.py by @RobbinBouwmeester in #801
• Update plotly by @RobbinBouwmeester in #804
• Update main_logos_sidebar.png by @RobbinBouwmeester in #802

Full Changelog: v0.8.26...v0.8.27

v0.8.26

What's Changed

• Fix AIF module naming by @rodvrees in #794
• DIA-NN with cfg: quantification method fix by @rodvrees in #795

Full Changelog: v0.8.25...v0.8.26

v0.8.25

What's Changed

• Move test for new datapoints by @RobbinBouwmeester in #792

Full Changelog: v0.8.24...v0.8.25

v0.8.24

What's Changed

• Update 4-quant-lfq-ion-dia-aif.md by @Jacky11 in #786
• faster version of quant_datapoint and benchmark functions by @wolski in #719
• Catch no new sub by @RobbinBouwmeester in #781
• DIA-NN with cfg: MBR setting for versions < 2.0 by @rodvrees in #791

Full Changelog: v0.8.23...v0.8.24

v0.8.23

What's Changed

• Update color scheme by @rodvrees in #779

Full Changelog: v0.8.22...v0.8.23

v0.8.22

What's Changed

• Fix extension error by @RobbinBouwmeester in #780

Full Changelog: v0.8.21...v0.8.22

v0.8.21

What's Changed

• Fixes FDR parsing PEAKS + introduces PEAKS Protein FDR parsing by @rodvrees in #778

Full Changelog: v0.8.20...v0.8.21