Merge pull request #121 from acoreas/main

fix PlanTUS call on windows

Author: spichardo

BabelBrain/ExternalBin/PlanTUS/run_win.bat

@@ -1,2 +1,2 @@
-call "$1/simnibs_env/bin/activate"
-python "$2/PlanTUS_wrapper.py" "$3" "$4" "$5" "$6" --skip_wb_view $7 $8
+call "%~1/simnibs_env/Scripts/activate"
+python "%~2/PlanTUS_wrapper.py" "%~3" "%~4" "%~5" "%~6" --skip_wb_view %7 %8

BabelBrain/PlanTUSViewer/RunPlanTUS.py

@@ -309,7 +309,7 @@ def Execute(self):
 
         mshPath=glob.glob(self.MainApp.Config['simbnibs_path'] + os.sep + "*.msh")[0]
         maskPath=Mat4Trajectory.replace('.txt','_PlanTUSMask.nii.gz')
-        self.PlanOutputPath=os.path.split(mshPath)[0]+os.sep+'PlanTUS'+os.sep+maskPath.split(os.sep)[-1].replace('.nii.gz','')
+        self.PlanOutputPath=os.path.split(mshPath)[0]+os.sep+'PlanTUS'+os.sep+Path(maskPath).name.replace('.nii.gz','')
         print('self.PlanOutputPath', self.PlanOutputPath)
 
         create_target_mask(t1Path, RMat[:3,3], maskPath,raddi=raddi)