Test PyGEM-notebooks in CI #33

	name: 'Install PyGEM and Run Test Suite'

	on:
	push:
	branches:
	- master
	- dev
	paths:
	- '**.py'
	- '.github/workflows/test_suite.yml'
	- 'pyproject.toml'

	pull_request:
	paths:
	- '**.py'
	- '.github/workflows/test_suite.yml'
	- 'pyproject.toml'

	# Run test suite every Saturday at 1AM GMT (1 hour after the Docker image is updated)
	schedule:
	- cron: '0 1 * * 6'

	# Stop the workflow if a new one is started
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	test_suite:
	name: 'Test suite'
	runs-on: ubuntu-latest
	container:
	# Use pygem:latest for master branch and pygem:dev otherwise
	image: ghcr.io/pygem-community/pygem:${{ github.ref == 'refs/heads/master' && 'latest' \|\| 'dev' }}
	options: --user root
	env:
	GITHUB_NOTEBOOKS_PATH: $HOME/PyGEM-notebooks

	steps:
	- name: 'Checkout the PyGEM-notebooks repo'
	uses: actions/checkout@v4
	with:
	repository: 'pygem-community/PyGEM-notebooks'
	path: ${{ env.GITHUB_NOTEBOOKS_PATH }}

	- name: 'Checkout the PyGEM repo'
	id: checkout
	uses: actions/checkout@v4

	- name: 'Reinstall PyGEM'
	run: pip install --break-system-packages -e .

	- name: 'Initialize PyGEM'
	run: initialize

	- name: 'Run tests'
	run: \|
	python3 -m coverage erase
	python3 -m pytest --cov=pygem -v --durations=20 pygem/tests

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