|
4 | 4 | """
|
5 | 5 | import sys
|
6 | 6 | import os
|
7 |
| -from os.path import join, exists |
8 | 7 | from contextlib import contextmanager
|
9 | 8 | import numpy as np
|
10 |
| -import tables |
11 | 9 |
|
12 | 10 | if sys.version_info[0] == 2:
|
13 | 11 | from cStringIO import StringIO
|
@@ -48,89 +46,6 @@ def get_data_dir():
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48 | 46 | return data_dir
|
49 | 47 |
|
50 | 48 |
|
51 |
| -def get_h5_data_file(): |
52 |
| - """ |
53 |
| - return the data file used for holding test data. If the data |
54 |
| - directory or file do not exist, they are created. |
55 |
| -
|
56 |
| - Notes |
57 |
| - ----- |
58 |
| - This should ideally be called from a context manage as so:: |
59 |
| -
|
60 |
| - with get_h5_data_file() as f: |
61 |
| - # do stuff |
62 |
| -
|
63 |
| - This way we know the file will be closed and cleaned up properly |
64 |
| -
|
65 |
| - """ |
66 |
| - data_dir = get_data_dir() |
67 |
| - |
68 |
| - if not exists(data_dir): |
69 |
| - os.mkdir(data_dir) |
70 |
| - |
71 |
| - data_file = join(data_dir, "testing_data.h5") |
72 |
| - |
73 |
| - return tables.open_file(data_file, "a", "Data for quantecon tests") |
74 |
| - |
75 |
| - |
76 |
| -def get_h5_data_group(grp_name, parent="/", f=get_h5_data_file()): |
77 |
| - """ |
78 |
| - Try to fetch the group named grp_name from the file f. If it doesn't |
79 |
| - yet exist, it is created |
80 |
| -
|
81 |
| - Parameters |
82 |
| - ---------- |
83 |
| - grp_name : str |
84 |
| - A string specifying the name of the new group. This should be |
85 |
| - only the group name, not including any information about the |
86 |
| - group's parent (path) |
87 |
| -
|
88 |
| - parent : str, optional(default="/") |
89 |
| - The parent or path for where the group should live. If nothing |
90 |
| - is given, the group will be created at the root node `"/"` |
91 |
| -
|
92 |
| - f : hdf5 file, optional(default=get_h5_data_file()) |
93 |
| - The file where this should happen. The default is the data file |
94 |
| - for these tests |
95 |
| -
|
96 |
| - Returns |
97 |
| - ------- |
98 |
| - existed : bool |
99 |
| - A boolean specifying whether the group existed or was created |
100 |
| -
|
101 |
| - group : tables.Group |
102 |
| - The requested group |
103 |
| -
|
104 |
| - Examples |
105 |
| - -------- |
106 |
| - with get_h5_data_file() as f: |
107 |
| - my_group = get_h5_data_group("jv") # data for jv tests |
108 |
| -
|
109 |
| - Notes |
110 |
| - ----- |
111 |
| - As with other code dealing with I/O from files, it is best to call |
112 |
| - this function within a context manager as shown in the example. |
113 |
| -
|
114 |
| - """ |
115 |
| - existed = True |
116 |
| - try: |
117 |
| - group = f.getNode(parent + grp_name) |
118 |
| - except: |
119 |
| - # doesn't exist |
120 |
| - existed = False |
121 |
| - msg = "data for {} tests".format(grp_name + ".py") |
122 |
| - group = f.create_group(parent, grp_name, msg) |
123 |
| - |
124 |
| - return existed, group |
125 |
| - |
126 |
| - |
127 |
| -def write_array(f, grp, array, name): |
128 |
| - "stores array in into group grp of h5 file f under name name" |
129 |
| - atom = tables.Atom.from_dtype(array.dtype) |
130 |
| - ds = f.createCArray(grp, name, atom, array.shape) |
131 |
| - ds[:] = array |
132 |
| - |
133 |
| - |
134 | 49 | def max_abs_diff(a1, a2):
|
135 | 50 | "return max absolute difference between two arrays"
|
136 | 51 | return np.max(np.abs(a1 - a2))
|
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