Skip to content

Commit 1611bfd

Browse files
author
Repronim neurodocker bot
committed
added new workflows
1 parent 91e3247 commit 1611bfd

15 files changed

+969
-0
lines changed

‎.github/workflows/afni.yml

+64
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,64 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'afni'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
afni:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['latest']
23+
method: ['binaries', 'source']
24+
afni_python: ['true', 'false']
25+
26+
steps:
27+
- uses: actions/checkout@v3
28+
29+
- name: Set up Python
30+
uses: actions/setup-python@v4
31+
with:
32+
python-version: "3.11"
33+
34+
- name: Install neurodocker
35+
run: python -m pip install --editable .[dev]
36+
37+
- name: Generate Dockerfile
38+
run: |
39+
40+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
41+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
42+
pkg_manager="apt"
43+
fi
44+
45+
yum_based=('fedora:40', 'centos:8')
46+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
47+
pkg_manager="yum"
48+
fi
49+
50+
neurodocker \
51+
generate docker \
52+
--base-image=${{ matrix.base_image }} \
53+
--pkg-manager=${pkg_manager} \
54+
--yes \
55+
--afni \
56+
version=${{ matrix.version }} \
57+
method=${{ matrix.method }} \
58+
install_python3=${{ matrix.afni_python }} \
59+
> Dockerfile_tmp
60+
61+
cat Dockerfile_tmp
62+
63+
- name: Build the Docker image
64+
run: docker build -f Dockerfile_tmp .

‎.github/workflows/ants.yml

+62
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,62 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'ants'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
ants:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['2.4.3', '2.4.2', '2.4.1', '2.3.4', '2.3.2', '2.3.1', '2.3.0', '2.2.0', '2.1.0', '2.0.3', '2.0.0']
23+
method: ['binaries', 'source']
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
28+
- name: Set up Python
29+
uses: actions/setup-python@v4
30+
with:
31+
python-version: "3.11"
32+
33+
- name: Install neurodocker
34+
run: python -m pip install --editable .[dev]
35+
36+
- name: Generate Dockerfile
37+
run: |
38+
39+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
40+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
41+
pkg_manager="apt"
42+
fi
43+
44+
yum_based=('fedora:40', 'centos:8')
45+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
46+
pkg_manager="yum"
47+
fi
48+
49+
neurodocker \
50+
generate docker \
51+
--base-image=${{ matrix.base_image }} \
52+
--pkg-manager=${pkg_manager} \
53+
--yes \
54+
--ants \
55+
version=${{ matrix.version }} \
56+
method=${{ matrix.method }} \
57+
> Dockerfile_tmp
58+
59+
cat Dockerfile_tmp
60+
61+
- name: Build the Docker image
62+
run: docker build -f Dockerfile_tmp .

‎.github/workflows/bids_validator.yml

+62
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,62 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'bids_validator'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
bids_validator:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['1.13.0', '1.12.0', '1.11.0', '1.10.0', '1.9.0']
23+
method: ['binaries']
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
28+
- name: Set up Python
29+
uses: actions/setup-python@v4
30+
with:
31+
python-version: "3.11"
32+
33+
- name: Install neurodocker
34+
run: python -m pip install --editable .[dev]
35+
36+
- name: Generate Dockerfile
37+
run: |
38+
39+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
40+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
41+
pkg_manager="apt"
42+
fi
43+
44+
yum_based=('fedora:40', 'centos:8')
45+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
46+
pkg_manager="yum"
47+
fi
48+
49+
neurodocker \
50+
generate docker \
51+
--base-image=${{ matrix.base_image }} \
52+
--pkg-manager=${pkg_manager} \
53+
--yes \
54+
--bids_validator \
55+
version=${{ matrix.version }} \
56+
method=${{ matrix.method }} \
57+
> Dockerfile_tmp
58+
59+
cat Dockerfile_tmp
60+
61+
- name: Build the Docker image
62+
run: docker build -f Dockerfile_tmp .

‎.github/workflows/cat12.yml

+63
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,63 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'cat12'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
cat12:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['12.9_R2023b', 'r1933_R2017b', 'r2166_R2017b']
23+
method: ['binaries']
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
28+
- name: Set up Python
29+
uses: actions/setup-python@v4
30+
with:
31+
python-version: "3.11"
32+
33+
- name: Install neurodocker
34+
run: python -m pip install --editable .[dev]
35+
36+
- name: Generate Dockerfile
37+
run: |
38+
39+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
40+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
41+
pkg_manager="apt"
42+
fi
43+
44+
yum_based=('fedora:40', 'centos:8')
45+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
46+
pkg_manager="yum"
47+
fi
48+
49+
neurodocker \
50+
generate docker \
51+
--base-image=${{ matrix.base_image }} \
52+
--pkg-manager=${pkg_manager} \
53+
--yes \
54+
--matlabmcr method='binaries' version='2017b' \
55+
--cat12 \
56+
version=${{ matrix.version }} \
57+
method=${{ matrix.method }} \
58+
> Dockerfile_tmp
59+
60+
cat Dockerfile_tmp
61+
62+
- name: Build the Docker image
63+
run: docker build -f Dockerfile_tmp .

‎.github/workflows/convert3d.yml

+62
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,62 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'convert3d'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
convert3d:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['nightly', '1.0.0']
23+
method: ['binaries']
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
28+
- name: Set up Python
29+
uses: actions/setup-python@v4
30+
with:
31+
python-version: "3.11"
32+
33+
- name: Install neurodocker
34+
run: python -m pip install --editable .[dev]
35+
36+
- name: Generate Dockerfile
37+
run: |
38+
39+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
40+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
41+
pkg_manager="apt"
42+
fi
43+
44+
yum_based=('fedora:40', 'centos:8')
45+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
46+
pkg_manager="yum"
47+
fi
48+
49+
neurodocker \
50+
generate docker \
51+
--base-image=${{ matrix.base_image }} \
52+
--pkg-manager=${pkg_manager} \
53+
--yes \
54+
--convert3d \
55+
version=${{ matrix.version }} \
56+
method=${{ matrix.method }} \
57+
> Dockerfile_tmp
58+
59+
cat Dockerfile_tmp
60+
61+
- name: Build the Docker image
62+
run: docker build -f Dockerfile_tmp .

‎.github/workflows/dcm2niix.yml

+62
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,62 @@
1+
# This is file is automatically generated. Do not edit.
2+
name: 'dcm2niix'
3+
4+
concurrency:
5+
group: ${{ github.workflow }}-${{ github.ref }}
6+
cancel-in-progress: true
7+
8+
on:
9+
push:
10+
branches: ["test_docker_build"]
11+
12+
jobs:
13+
14+
dcm2niix:
15+
16+
runs-on: ubuntu-latest
17+
18+
strategy:
19+
fail-fast: false
20+
matrix:
21+
base_image: ['ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim', 'fedora:40', 'centos:8']
22+
version: ['latest', 'v1.0.20201102', 'v1.0.20200331', 'v1.0.20190902']
23+
method: ['binaries', 'source']
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
28+
- name: Set up Python
29+
uses: actions/setup-python@v4
30+
with:
31+
python-version: "3.11"
32+
33+
- name: Install neurodocker
34+
run: python -m pip install --editable .[dev]
35+
36+
- name: Generate Dockerfile
37+
run: |
38+
39+
apt_based=('ubuntu:24.04', 'ubuntu:22.04', 'debian:bookworm-slim', 'debian:bullseye-slim')
40+
if [[ " ${apt_based[*]} " =~ ${{ matrix.base_image }} ]]; then
41+
pkg_manager="apt"
42+
fi
43+
44+
yum_based=('fedora:40', 'centos:8')
45+
if [[ " ${yum_based[*]} " =~ ${{ matrix.base_image }} ]]; then
46+
pkg_manager="yum"
47+
fi
48+
49+
neurodocker \
50+
generate docker \
51+
--base-image=${{ matrix.base_image }} \
52+
--pkg-manager=${pkg_manager} \
53+
--yes \
54+
--dcm2niix \
55+
version=${{ matrix.version }} \
56+
method=${{ matrix.method }} \
57+
> Dockerfile_tmp
58+
59+
cat Dockerfile_tmp
60+
61+
- name: Build the Docker image
62+
run: docker build -f Dockerfile_tmp .

0 commit comments

Comments
 (0)