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adding example for modified file from FS #3

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djarecka
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This is a result from FS that I modified to add additional provenance information. Please let me know if that looks good

Copilot
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Pull Request Overview

Adds a new Turtle file capturing FreeSurfer lh.aparc statistics along with expanded provenance metadata; this example illustrates how additional provenance information can be embedded in an RDF serialization.

  • Introduces lh.aparc_nidm_modified.ttl with full FreeSurfer stat values
  • Adds provenance entities, activities, and agents with detailed metadata
  • Defines dataset and acquisition objects, linking BIDS and NIDM concepts
Comments suppressed due to low confidence (2)

example/freesurfer/lh.aparc_nidm_modified.ttl:344

  • The literal "version:..." appears to be a placeholder. Please replace it with the actual software version string to maintain accurate provenance.
    prov:hadVersion "version:..." .

example/freesurfer/lh.aparc_nidm_modified.ttl:358

  • The triple here uses freesurfer: without specifying a term, resulting in a syntax error. Please provide the correct IRI or value, for example freesurfer:reconall.
    nidm:NIDM_0000164 freesurfer: .

example/freesurfer/lh.aparc_nidm_modified.ttl
Comment on lines +375 to +377
freesurfer:AnnotationFileTimeStamp "2025/04/18 11:45:30" ;
freesurfer:BrainVolStatsFixed-NotNeeded "because voxelvolume=1mm3" ;
freesurfer:CreationTime "2025/04/18-16:09:54-GMT" ;
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[nitpick] Timestamp formats are inconsistent (compare with CreationTime on line 377). Consider standardizing on a single format (e.g., ISO 8601) and typing as xsd:dateTime for clarity.

Suggested change
freesurfer:AnnotationFileTimeStamp "2025/04/18 11:45:30" ;
freesurfer:BrainVolStatsFixed-NotNeeded "because voxelvolume=1mm3" ;
freesurfer:CreationTime "2025/04/18-16:09:54-GMT" ;
freesurfer:AnnotationFileTimeStamp "2025-04-18T11:45:30Z"^^xsd:dateTime ;
freesurfer:BrainVolStatsFixed-NotNeeded "because voxelvolume=1mm3" ;
freesurfer:CreationTime "2025-04-18T16:09:54Z"^^xsd:dateTime ;

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example/freesurfer/lh.aparc_nidm_modified.ttl
crypto:sha512 "f249d6bffdf68b0690b20698d834231ae054443fa5e2b1168cba72999f5617cad07ed55cfd4cdf8fbe6ba81158d1020dc23adb2ca222ebd2495f69f2b1efbcba" ;
nidm:filename "sub-0051465_T1w.nii.gz" ;
nidm:hasImageUsageType nidm:Anatomical ;
nfo:filename "bids:abide-Caltech:sub-0051493/anat/sub-0051493_T1w.nii.gz" ;
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The filename references sub-0051493 but the AcquisitionObject uses sub-0051465. This ID mismatch may be a typo—ensure the subject identifier is consistent.

Suggested change
nfo:filename "bids:abide-Caltech:sub-0051493/anat/sub-0051493_T1w.nii.gz" ;
nfo:filename "bids:abide-Caltech:sub-0051465/anat/sub-0051465_T1w.nii.gz" ;

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@djarecka this one is a good catch; the subject id is different

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yes, sorry, I was running this post babs, and pointed to the wrong file.

yibeichan
yibeichan reviewed Jul 18, 2025
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so our filepath will remain relative?
and what is "bids" in "bids:abide-Caltech"?

example/freesurfer/lh.aparc_nidm_modified.ttl
crypto:sha512 "f249d6bffdf68b0690b20698d834231ae054443fa5e2b1168cba72999f5617cad07ed55cfd4cdf8fbe6ba81158d1020dc23adb2ca222ebd2495f69f2b1efbcba" ;
nidm:filename "sub-0051465_T1w.nii.gz" ;
nidm:hasImageUsageType nidm:Anatomical ;
nfo:filename "bids:abide-Caltech:sub-0051493/anat/sub-0051493_T1w.nii.gz" ;
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@djarecka this one is a good catch; the subject id is different

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@dbkeator @satra hi hi, do you think this file looks reasonable (for downstream analysis)?

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satra commented Jul 18, 2025

can someone describe what the modifications are relative to the original?

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so our filepath will remain relative? and what is "bids" in "bids:abide-Caltech"?

https://bids-specification.readthedocs.io/en/stable/common-principles.html#bids-uri

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can someone describe what the modifications are relative to the original?

there are some changes due to fixing the prefix for fressurface so the full diff is long, and diff command did pretty bad job, so I prepared some shorter improved version:

adding dataset 
> niiri:a1b7cf40-603a-11f0-88dc-a6497c4a616c a bids:Dataset,
>        prov:Collection,
>        prov:Entity ;
>    bids:BIDSVersion "1.4.2" ;
>    bids:name "abide-Caltech" ;
>    prov:hadMember niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 .

 changes to the FSStatCollection
< niiri:e36972dc-1c70-11f0-a1cc-d404e674afa0 a ns3:FSStatsCollection,
<        prov:Entity ;
<    prov:wasGeneratedBy niiri:b3a8bb18-1c70-11f0-a1cc-d404e674afa0 ;
<    ns1:fs_000001 129712 ;
< ...
 
> niiri:e36972dc-1c70-11f0-a1cc-d404e674afa0 a nidm:FSStatsCollection,
>         prov:Entity ;
>     prov:wasGeneratedBy niiri:a1b7d7f6-603a-11f0-88dc-a6497c4a616c,
>        niiri:b3a8bb18-1c70-11f0-a1cc-d404e674afa0 ;
>     freesurfer:fs_000001 129712 ;
> ...

adding software agent and general activity of FREESURFER RECONALL that uses the T1w file (so we don't have only "Freesurfer segmentation statistics")

> niiri:a1b7d670-603a-11f0-88dc-a6497c4a616c a prov:Agent,
>         prov:SoftwareAgent ;
>     nidm:NIDM_0000164 freesurfer:reconall ;
>     prov:hadVersion "version:..." .
> 
> niiri:a1b7d7f6-603a-11f0-88dc-a6497c4a616c a prov:Activity ;
>     dcterms:description "FREESURFER RECONALL segmentation statistics" ;
>     prov:qualifiedAssociation [ a prov:Association ;
>             prov:agent niiri:a1b7d670-603a-11f0-88dc-a6497c4a616c ;
>             prov:hadRole nidm:NIDM_0000164 ],
>         [ a prov:Association ;
>             prov:agent niiri:a3a8c4f0-1c70-11f0-a1cc-d404e674afa0 ;
>             prov:hadRole sio:Subject ] ;
>     prov:used niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 .

modyfying the file description
< niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 a ns3:MagneticResonanceImaging,
<         ns3:T1Weighted ;
<     ns3:filename "sub-0051465_T1w.nii.gz" ;
<    ns3:hasImageUsageType ns3:Anatomical ;
<    prov:Location "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/inputs/data/BIDS/sub-0051465/anat/sub-0051465_T1w.nii.gz" .

> niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 a nidm:AcquisitionObject,
>         nidm:MagneticResonanceImaging,
>        nidm:T1Weighted,
>        prov:Entity ;
>    crypto:sha512 "f249d6bffdf68b0690b20698d834231ae054443fa5e2b1168cba72999f5617cad07ed55cfd4cdf8fbe6ba81158d1020dc23adb2ca222ebd2495f69f2b1efbcba" ;
>    nidm:filename "sub-0051465_T1w.nii.gz" ;
>    nidm:hasImageUsageType nidm:Anatomical ;
>    nfo:filename "bids:abide-Caltech:sub-0051493/anat/sub-0051493_T1w.nii.gz" ;
>    prov:Location "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/inputs/data/BIDS/sub-0051465/anat/sub-0051465_T1w.nii.gz" .
Click to expand the full diff 
0a1,2
> @prefix bids: <http://bids.neuroimaging.io/> .
> @prefix crypto: <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#> .
1a4,6
> @prefix freesurfer: <https://surfer.nmr.mgh.harvard.edu/> .
> @prefix nfo: <http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#> .
> @prefix nidm: <http://purl.org/nidash/nidm#> .
3d7
< @prefix ns1: <https://surfer.nmr.mgh.harvard.edu/> .
5d8
< @prefix ns3: <http://purl.org/nidash/nidm#> .
6a10
> @prefix sio: <http://semanticscience.org/ontology/sio.owl#> .
9c13,14
< niiri:e36972dc-1c70-11f0-a1cc-d404e674afa0 a ns3:FSStatsCollection,
---
> niiri:a1b7cf40-603a-11f0-88dc-a6497c4a616c a bids:Dataset,
>         prov:Collection,
11,327c16,18
<     prov:wasGeneratedBy niiri:b3a8bb18-1c70-11f0-a1cc-d404e674afa0 ;
<     ns1:fs_000001 129712 ;
<     ns1:fs_000002 "87498.7"^^xsd:float ;
<     ns1:fs_000003 "1458685.0"^^xsd:float ;
<     ns1:fs_000004 "1138050.0"^^xsd:float ;
<     ns1:fs_000005 "1138050.0"^^xsd:float ;
<     ns1:fs_000006 "518305.803827"^^xsd:float ;
<     ns1:fs_000007 "1293145.0"^^xsd:float ;
<     ns1:fs_000008 "972510.0"^^xsd:float ;
<     ns1:fs_000009 "1570651.410798"^^xsd:float ;
<     ns1:fs_000137 "2.61161"^^xsd:float ;
<     ns1:fs_000444 1870 ;
<     ns1:fs_000445 1256 ;
<     ns1:fs_000446 3544 ;
<     ns1:fs_000447 "2.607"^^xsd:float ;
<     ns1:fs_000448 "0.647"^^xsd:float ;
<     ns1:fs_000449 "0.108"^^xsd:float ;
<     ns1:fs_000450 "0.02"^^xsd:float ;
<     ns1:fs_000451 17 ;
<     ns1:fs_000452 "1.6"^^xsd:float ;
<     ns1:fs_000453 943 ;
<     ns1:fs_000454 705 ;
<     ns1:fs_000455 2040 ;
<     ns1:fs_000456 "2.562"^^xsd:float ;
<     ns1:fs_000457 "0.631"^^xsd:float ;
<     ns1:fs_000458 "0.158"^^xsd:float ;
<     ns1:fs_000459 "0.041"^^xsd:float ;
<     ns1:fs_000460 22 ;
<     ns1:fs_000461 "1.3"^^xsd:float ;
<     ns1:fs_000462 3523 ;
<     ns1:fs_000463 2336 ;
<     ns1:fs_000464 7803 ;
<     ns1:fs_000465 "2.88"^^xsd:float ;
<     ns1:fs_000466 "0.619"^^xsd:float ;
<     ns1:fs_000467 "0.109"^^xsd:float ;
<     ns1:fs_000468 "0.022"^^xsd:float ;
<     ns1:fs_000469 31 ;
<     ns1:fs_000470 "3.0"^^xsd:float ;
<     ns1:fs_000471 2593 ;
<     ns1:fs_000472 1816 ;
<     ns1:fs_000473 3211 ;
<     ns1:fs_000474 "1.781"^^xsd:float ;
<     ns1:fs_000475 "0.449"^^xsd:float ;
<     ns1:fs_000476 "0.154"^^xsd:float ;
<     ns1:fs_000477 "0.042"^^xsd:float ;
<     ns1:fs_000478 40 ;
<     ns1:fs_000479 "5.1"^^xsd:float ;
<     ns1:fs_000480 590 ;
<     ns1:fs_000481 358 ;
<     ns1:fs_000482 1289 ;
<     ns1:fs_000483 "2.931"^^xsd:float ;
<     ns1:fs_000484 "1.177"^^xsd:float ;
<     ns1:fs_000485 "0.09"^^xsd:float ;
<     ns1:fs_000486 "0.024"^^xsd:float ;
<     ns1:fs_000487 3 ;
<     ns1:fs_000488 "0.5"^^xsd:float ;
<     ns1:fs_000489 4633 ;
<     ns1:fs_000490 3204 ;
<     ns1:fs_000491 9642 ;
<     ns1:fs_000492 "2.702"^^xsd:float ;
<     ns1:fs_000493 "0.575"^^xsd:float ;
<     ns1:fs_000494 "0.119"^^xsd:float ;
<     ns1:fs_000495 "0.025"^^xsd:float ;
<     ns1:fs_000496 50 ;
<     ns1:fs_000497 "4.7"^^xsd:float ;
<     ns1:fs_000498 6134 ;
<     ns1:fs_000499 4169 ;
<     ns1:fs_000500 11781 ;
<     ns1:fs_000501 "2.604"^^xsd:float ;
<     ns1:fs_000502 "0.555"^^xsd:float ;
<     ns1:fs_000503 "0.121"^^xsd:float ;
<     ns1:fs_000504 "0.025"^^xsd:float ;
<     ns1:fs_000505 61 ;
<     ns1:fs_000506 "6.3"^^xsd:float ;
<     ns1:fs_000507 4889 ;
<     ns1:fs_000508 3411 ;
<     ns1:fs_000509 12186 ;
<     ns1:fs_000510 "2.952"^^xsd:float ;
<     ns1:fs_000511 "0.741"^^xsd:float ;
<     ns1:fs_000512 "0.117"^^xsd:float ;
<     ns1:fs_000513 "0.028"^^xsd:float ;
<     ns1:fs_000514 55 ;
<     ns1:fs_000515 "5.4"^^xsd:float ;
<     ns1:fs_000516 1603 ;
<     ns1:fs_000517 1111 ;
<     ns1:fs_000518 2532 ;
<     ns1:fs_000519 "2.199"^^xsd:float ;
<     ns1:fs_000520 "0.857"^^xsd:float ;
<     ns1:fs_000521 "0.118"^^xsd:float ;
<     ns1:fs_000522 "0.031"^^xsd:float ;
<     ns1:fs_000523 18 ;
<     ns1:fs_000524 "2.1"^^xsd:float ;
<     ns1:fs_000525 8623 ;
<     ns1:fs_000526 5684 ;
<     ns1:fs_000527 11631 ;
<     ns1:fs_000528 "1.968"^^xsd:float ;
<     ns1:fs_000529 "0.576"^^xsd:float ;
<     ns1:fs_000530 "0.131"^^xsd:float ;
<     ns1:fs_000531 "0.033"^^xsd:float ;
<     ns1:fs_000532 99 ;
<     ns1:fs_000533 "12.4"^^xsd:float ;
<     ns1:fs_000534 3801 ;
<     ns1:fs_000535 2638 ;
<     ns1:fs_000536 9537 ;
<     ns1:fs_000537 "3.078"^^xsd:float ;
<     ns1:fs_000538 "0.556"^^xsd:float ;
<     ns1:fs_000539 "0.125"^^xsd:float ;
<     ns1:fs_000540 "0.029"^^xsd:float ;
<     ns1:fs_000541 38 ;
<     ns1:fs_000542 "4.7"^^xsd:float ;
<     ns1:fs_000543 3835 ;
<     ns1:fs_000544 2630 ;
<     ns1:fs_000545 5055 ;
<     ns1:fs_000546 "1.869"^^xsd:float ;
<     ns1:fs_000547 "0.534"^^xsd:float ;
<     ns1:fs_000548 "0.132"^^xsd:float ;
<     ns1:fs_000549 "0.033"^^xsd:float ;
<     ns1:fs_000550 42 ;
<     ns1:fs_000551 "5.2"^^xsd:float ;
<     ns1:fs_000552 2212 ;
<     ns1:fs_000553 1614 ;
<     ns1:fs_000554 5519 ;
<     ns1:fs_000555 "3.079"^^xsd:float ;
<     ns1:fs_000556 "0.68"^^xsd:float ;
<     ns1:fs_000557 "0.119"^^xsd:float ;
<     ns1:fs_000558 "0.027"^^xsd:float ;
<     ns1:fs_000559 24 ;
<     ns1:fs_000560 "2.4"^^xsd:float ;
<     ns1:fs_000561 4822 ;
<     ns1:fs_000562 3228 ;
<     ns1:fs_000563 12783 ;
<     ns1:fs_000564 "3.106"^^xsd:float ;
<     ns1:fs_000565 "0.703"^^xsd:float ;
<     ns1:fs_000566 "0.11"^^xsd:float ;
<     ns1:fs_000567 "0.024"^^xsd:float ;
<     ns1:fs_000568 49 ;
<     ns1:fs_000569 "4.3"^^xsd:float ;
<     ns1:fs_000570 997 ;
<     ns1:fs_000571 617 ;
<     ns1:fs_000572 1665 ;
<     ns1:fs_000573 "2.338"^^xsd:float ;
<     ns1:fs_000574 "0.641"^^xsd:float ;
<     ns1:fs_000575 "0.075"^^xsd:float ;
<     ns1:fs_000576 "0.014"^^xsd:float ;
<     ns1:fs_000577 5 ;
<     ns1:fs_000578 "0.5"^^xsd:float ;
<     ns1:fs_000579 2456 ;
<     ns1:fs_000580 1475 ;
<     ns1:fs_000581 3499 ;
<     ns1:fs_000582 "2.22"^^xsd:float ;
<     ns1:fs_000583 "0.607"^^xsd:float ;
<     ns1:fs_000584 "0.118"^^xsd:float ;
<     ns1:fs_000585 "0.035"^^xsd:float ;
<     ns1:fs_000586 27 ;
<     ns1:fs_000587 "3.7"^^xsd:float ;
<     ns1:fs_000588 2324 ;
<     ns1:fs_000589 1556 ;
<     ns1:fs_000590 5275 ;
<     ns1:fs_000591 "2.897"^^xsd:float ;
<     ns1:fs_000592 "0.496"^^xsd:float ;
<     ns1:fs_000593 "0.099"^^xsd:float ;
<     ns1:fs_000594 "0.021"^^xsd:float ;
<     ns1:fs_000595 18 ;
<     ns1:fs_000596 "1.6"^^xsd:float ;
<     ns1:fs_000597 1136 ;
<     ns1:fs_000598 785 ;
<     ns1:fs_000599 3008 ;
<     ns1:fs_000600 "3.069"^^xsd:float ;
<     ns1:fs_000601 "0.611"^^xsd:float ;
<     ns1:fs_000602 "0.137"^^xsd:float ;
<     ns1:fs_000603 "0.036"^^xsd:float ;
<     ns1:fs_000604 16 ;
<     ns1:fs_000605 "1.7"^^xsd:float ;
<     ns1:fs_000606 2026 ;
<     ns1:fs_000607 1419 ;
<     ns1:fs_000608 4604 ;
<     ns1:fs_000609 "2.878"^^xsd:float ;
<     ns1:fs_000610 "0.49"^^xsd:float ;
<     ns1:fs_000611 "0.109"^^xsd:float ;
<     ns1:fs_000612 "0.022"^^xsd:float ;
<     ns1:fs_000613 19 ;
<     ns1:fs_000614 "1.8"^^xsd:float ;
<     ns1:fs_000615 1604 ;
<     ns1:fs_000616 1252 ;
<     ns1:fs_000617 1401 ;
<     ns1:fs_000618 "1.343"^^xsd:float ;
<     ns1:fs_000619 "0.285"^^xsd:float ;
<     ns1:fs_000620 "0.159"^^xsd:float ;
<     ns1:fs_000621 "0.042"^^xsd:float ;
<     ns1:fs_000622 21 ;
<     ns1:fs_000623 "3.3"^^xsd:float ;
<     ns1:fs_000624 6684 ;
<     ns1:fs_000625 4121 ;
<     ns1:fs_000626 10399 ;
<     ns1:fs_000627 "2.198"^^xsd:float ;
<     ns1:fs_000628 "0.699"^^xsd:float ;
<     ns1:fs_000629 "0.11"^^xsd:float ;
<     ns1:fs_000630 "0.026"^^xsd:float ;
<     ns1:fs_000631 75 ;
<     ns1:fs_000632 "6.7"^^xsd:float ;
<     ns1:fs_000633 1813 ;
<     ns1:fs_000634 1309 ;
<     ns1:fs_000635 3353 ;
<     ns1:fs_000636 "2.385"^^xsd:float ;
<     ns1:fs_000637 "0.744"^^xsd:float ;
<     ns1:fs_000638 "0.136"^^xsd:float ;
<     ns1:fs_000639 "0.029"^^xsd:float ;
<     ns1:fs_000640 27 ;
<     ns1:fs_000641 "2.4"^^xsd:float ;
<     ns1:fs_000642 8164 ;
<     ns1:fs_000643 5296 ;
<     ns1:fs_000644 15471 ;
<     ns1:fs_000645 "2.671"^^xsd:float ;
<     ns1:fs_000646 "0.679"^^xsd:float ;
<     ns1:fs_000647 "0.112"^^xsd:float ;
<     ns1:fs_000648 "0.027"^^xsd:float ;
<     ns1:fs_000649 68 ;
<     ns1:fs_000650 "8.9"^^xsd:float ;
<     ns1:fs_000651 5464 ;
<     ns1:fs_000652 3764 ;
<     ns1:fs_000653 9198 ;
<     ns1:fs_000654 "2.336"^^xsd:float ;
<     ns1:fs_000655 "0.503"^^xsd:float ;
<     ns1:fs_000656 "0.121"^^xsd:float ;
<     ns1:fs_000657 "0.027"^^xsd:float ;
<     ns1:fs_000658 58 ;
<     ns1:fs_000659 "6.1"^^xsd:float ;
<     ns1:fs_000660 1063 ;
<     ns1:fs_000661 790 ;
<     ns1:fs_000662 2933 ;
<     ns1:fs_000663 "2.956"^^xsd:float ;
<     ns1:fs_000664 "0.796"^^xsd:float ;
<     ns1:fs_000665 "0.128"^^xsd:float ;
<     ns1:fs_000666 "0.032"^^xsd:float ;
<     ns1:fs_000667 16 ;
<     ns1:fs_000668 "1.5"^^xsd:float ;
<     ns1:fs_000669 8779 ;
<     ns1:fs_000670 6198 ;
<     ns1:fs_000671 18701 ;
<     ns1:fs_000672 "2.652"^^xsd:float ;
<     ns1:fs_000673 "0.573"^^xsd:float ;
<     ns1:fs_000674 "0.124"^^xsd:float ;
<     ns1:fs_000675 "0.027"^^xsd:float ;
<     ns1:fs_000676 99 ;
<     ns1:fs_000677 "9.9"^^xsd:float ;
<     ns1:fs_000678 11174 ;
<     ns1:fs_000679 7544 ;
<     ns1:fs_000680 26065 ;
<     ns1:fs_000681 "2.981"^^xsd:float ;
<     ns1:fs_000682 "0.6"^^xsd:float ;
<     ns1:fs_000683 "0.119"^^xsd:float ;
<     ns1:fs_000684 "0.027"^^xsd:float ;
<     ns1:fs_000685 111 ;
<     ns1:fs_000686 "12.1"^^xsd:float ;
<     ns1:fs_000687 7924 ;
<     ns1:fs_000688 5150 ;
<     ns1:fs_000689 13067 ;
<     ns1:fs_000690 "2.314"^^xsd:float ;
<     ns1:fs_000691 "0.508"^^xsd:float ;
<     ns1:fs_000692 "0.121"^^xsd:float ;
<     ns1:fs_000693 "0.028"^^xsd:float ;
<     ns1:fs_000694 79 ;
<     ns1:fs_000695 "8.7"^^xsd:float ;
<     ns1:fs_000696 6202 ;
<     ns1:fs_000697 4098 ;
<     ns1:fs_000698 14938 ;
<     ns1:fs_000699 "3.084"^^xsd:float ;
<     ns1:fs_000700 "0.782"^^xsd:float ;
<     ns1:fs_000701 "0.095"^^xsd:float ;
<     ns1:fs_000702 "0.018"^^xsd:float ;
<     ns1:fs_000703 48 ;
<     ns1:fs_000704 "4.6"^^xsd:float ;
<     ns1:fs_000705 6145 ;
<     ns1:fs_000706 4167 ;
<     ns1:fs_000707 12821 ;
<     ns1:fs_000708 "2.751"^^xsd:float ;
<     ns1:fs_000709 "0.555"^^xsd:float ;
<     ns1:fs_000710 "0.118"^^xsd:float ;
<     ns1:fs_000711 "0.024"^^xsd:float ;
<     ns1:fs_000712 62 ;
<     ns1:fs_000713 "6.2"^^xsd:float ;
<     ns1:fs_000714 396 ;
<     ns1:fs_000715 292 ;
<     ns1:fs_000716 1416 ;
<     ns1:fs_000717 "3.25"^^xsd:float ;
<     ns1:fs_000718 "0.744"^^xsd:float ;
<     ns1:fs_000719 "0.152"^^xsd:float ;
<     ns1:fs_000720 "0.045"^^xsd:float ;
<     ns1:fs_000721 7 ;
<     ns1:fs_000722 "0.5"^^xsd:float ;
<     ns1:fs_000723 570 ;
<     ns1:fs_000724 464 ;
<     ns1:fs_000725 2607 ;
<     ns1:fs_000726 "3.6"^^xsd:float ;
<     ns1:fs_000727 "0.727"^^xsd:float ;
<     ns1:fs_000728 "0.131"^^xsd:float ;
<     ns1:fs_000729 "0.034"^^xsd:float ;
<     ns1:fs_000730 8 ;
<     ns1:fs_000731 "0.7"^^xsd:float ;
<     ns1:fs_000732 964 ;
<     ns1:fs_000733 623 ;
<     ns1:fs_000734 1844 ;
<     ns1:fs_000735 "2.56"^^xsd:float ;
<     ns1:fs_000736 "0.385"^^xsd:float ;
<     ns1:fs_000737 "0.097"^^xsd:float ;
<     ns1:fs_000738 "0.026"^^xsd:float ;
<     ns1:fs_000739 8 ;
<     ns1:fs_000740 "0.8"^^xsd:float ;
<     ns1:fs_000741 3756 ;
<     ns1:fs_000742 2418 ;
<     ns1:fs_000743 7824 ;
<     ns1:fs_000744 "3.04"^^xsd:float ;
<     ns1:fs_000745 "1.011"^^xsd:float ;
<     ns1:fs_000746 "0.097"^^xsd:float ;
<     ns1:fs_000747 "0.028"^^xsd:float ;
<     ns1:fs_000748 30 ;
<     ns1:fs_000749 "3.6"^^xsd:float .
---
>     bids:BIDSVersion "1.4.2" ;
>     bids:name "abide-Caltech" ;
>     prov:hadMember niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 .
329c20,341
< niiri:a3a8c2de-1c70-11f0-a1cc-d404e674afa0 a prov:Agent,
---
> niiri:e36972dc-1c70-11f0-a1cc-d404e674afa0 a nidm:FSStatsCollection,
>         prov:Entity ;
>     prov:wasGeneratedBy niiri:a1b7d7f6-603a-11f0-88dc-a6497c4a616c,
>         niiri:b3a8bb18-1c70-11f0-a1cc-d404e674afa0 ;
>     freesurfer:fs_000001 129712 ;
>     freesurfer:fs_000002 "87498.7"^^xsd:float ;
>     freesurfer:fs_000003 "1458685.0"^^xsd:float ;
>     freesurfer:fs_000004 "1138050.0"^^xsd:float ;
>     freesurfer:fs_000005 "1138050.0"^^xsd:float ;
>     freesurfer:fs_000006 "518305.803827"^^xsd:float ;
>     freesurfer:fs_000007 "1293145.0"^^xsd:float ;
>     freesurfer:fs_000008 "972510.0"^^xsd:float ;
>     freesurfer:fs_000009 "1570651.410798"^^xsd:float ;
>     freesurfer:fs_000137 "2.61161"^^xsd:float ;
>     freesurfer:fs_000444 1870 ;
>     freesurfer:fs_000445 1256 ;
>     freesurfer:fs_000446 3544 ;
>     freesurfer:fs_000447 "2.607"^^xsd:float ;
>     freesurfer:fs_000448 "0.647"^^xsd:float ;
>     freesurfer:fs_000449 "0.108"^^xsd:float ;
>     freesurfer:fs_000450 "0.02"^^xsd:float ;
>     freesurfer:fs_000451 17 ;
>     freesurfer:fs_000452 "1.6"^^xsd:float ;
>     freesurfer:fs_000453 943 ;
>     freesurfer:fs_000454 705 ;
>     freesurfer:fs_000455 2040 ;
>     freesurfer:fs_000456 "2.562"^^xsd:float ;
>     freesurfer:fs_000457 "0.631"^^xsd:float ;
>     freesurfer:fs_000458 "0.158"^^xsd:float ;
>     freesurfer:fs_000459 "0.041"^^xsd:float ;
>     freesurfer:fs_000460 22 ;
>     freesurfer:fs_000461 "1.3"^^xsd:float ;
>     freesurfer:fs_000462 3523 ;
>     freesurfer:fs_000463 2336 ;
>     freesurfer:fs_000464 7803 ;
>     freesurfer:fs_000465 "2.88"^^xsd:float ;
>     freesurfer:fs_000466 "0.619"^^xsd:float ;
>     freesurfer:fs_000467 "0.109"^^xsd:float ;
>     freesurfer:fs_000468 "0.022"^^xsd:float ;
>     freesurfer:fs_000469 31 ;
>     freesurfer:fs_000470 "3.0"^^xsd:float ;
>     freesurfer:fs_000471 2593 ;
>     freesurfer:fs_000472 1816 ;
>     freesurfer:fs_000473 3211 ;
>     freesurfer:fs_000474 "1.781"^^xsd:float ;
>     freesurfer:fs_000475 "0.449"^^xsd:float ;
>     freesurfer:fs_000476 "0.154"^^xsd:float ;
>     freesurfer:fs_000477 "0.042"^^xsd:float ;
>     freesurfer:fs_000478 40 ;
>     freesurfer:fs_000479 "5.1"^^xsd:float ;
>     freesurfer:fs_000480 590 ;
>     freesurfer:fs_000481 358 ;
>     freesurfer:fs_000482 1289 ;
>     freesurfer:fs_000483 "2.931"^^xsd:float ;
>     freesurfer:fs_000484 "1.177"^^xsd:float ;
>     freesurfer:fs_000485 "0.09"^^xsd:float ;
>     freesurfer:fs_000486 "0.024"^^xsd:float ;
>     freesurfer:fs_000487 3 ;
>     freesurfer:fs_000488 "0.5"^^xsd:float ;
>     freesurfer:fs_000489 4633 ;
>     freesurfer:fs_000490 3204 ;
>     freesurfer:fs_000491 9642 ;
>     freesurfer:fs_000492 "2.702"^^xsd:float ;
>     freesurfer:fs_000493 "0.575"^^xsd:float ;
>     freesurfer:fs_000494 "0.119"^^xsd:float ;
>     freesurfer:fs_000495 "0.025"^^xsd:float ;
>     freesurfer:fs_000496 50 ;
>     freesurfer:fs_000497 "4.7"^^xsd:float ;
>     freesurfer:fs_000498 6134 ;
>     freesurfer:fs_000499 4169 ;
>     freesurfer:fs_000500 11781 ;
>     freesurfer:fs_000501 "2.604"^^xsd:float ;
>     freesurfer:fs_000502 "0.555"^^xsd:float ;
>     freesurfer:fs_000503 "0.121"^^xsd:float ;
>     freesurfer:fs_000504 "0.025"^^xsd:float ;
>     freesurfer:fs_000505 61 ;
>     freesurfer:fs_000506 "6.3"^^xsd:float ;
>     freesurfer:fs_000507 4889 ;
>     freesurfer:fs_000508 3411 ;
>     freesurfer:fs_000509 12186 ;
>     freesurfer:fs_000510 "2.952"^^xsd:float ;
>     freesurfer:fs_000511 "0.741"^^xsd:float ;
>     freesurfer:fs_000512 "0.117"^^xsd:float ;
>     freesurfer:fs_000513 "0.028"^^xsd:float ;
>     freesurfer:fs_000514 55 ;
>     freesurfer:fs_000515 "5.4"^^xsd:float ;
>     freesurfer:fs_000516 1603 ;
>     freesurfer:fs_000517 1111 ;
>     freesurfer:fs_000518 2532 ;
>     freesurfer:fs_000519 "2.199"^^xsd:float ;
>     freesurfer:fs_000520 "0.857"^^xsd:float ;
>     freesurfer:fs_000521 "0.118"^^xsd:float ;
>     freesurfer:fs_000522 "0.031"^^xsd:float ;
>     freesurfer:fs_000523 18 ;
>     freesurfer:fs_000524 "2.1"^^xsd:float ;
>     freesurfer:fs_000525 8623 ;
>     freesurfer:fs_000526 5684 ;
>     freesurfer:fs_000527 11631 ;
>     freesurfer:fs_000528 "1.968"^^xsd:float ;
>     freesurfer:fs_000529 "0.576"^^xsd:float ;
>     freesurfer:fs_000530 "0.131"^^xsd:float ;
>     freesurfer:fs_000531 "0.033"^^xsd:float ;
>     freesurfer:fs_000532 99 ;
>     freesurfer:fs_000533 "12.4"^^xsd:float ;
>     freesurfer:fs_000534 3801 ;
>     freesurfer:fs_000535 2638 ;
>     freesurfer:fs_000536 9537 ;
>     freesurfer:fs_000537 "3.078"^^xsd:float ;
>     freesurfer:fs_000538 "0.556"^^xsd:float ;
>     freesurfer:fs_000539 "0.125"^^xsd:float ;
>     freesurfer:fs_000540 "0.029"^^xsd:float ;
>     freesurfer:fs_000541 38 ;
>     freesurfer:fs_000542 "4.7"^^xsd:float ;
>     freesurfer:fs_000543 3835 ;
>     freesurfer:fs_000544 2630 ;
>     freesurfer:fs_000545 5055 ;
>     freesurfer:fs_000546 "1.869"^^xsd:float ;
>     freesurfer:fs_000547 "0.534"^^xsd:float ;
>     freesurfer:fs_000548 "0.132"^^xsd:float ;
>     freesurfer:fs_000549 "0.033"^^xsd:float ;
>     freesurfer:fs_000550 42 ;
>     freesurfer:fs_000551 "5.2"^^xsd:float ;
>     freesurfer:fs_000552 2212 ;
>     freesurfer:fs_000553 1614 ;
>     freesurfer:fs_000554 5519 ;
>     freesurfer:fs_000555 "3.079"^^xsd:float ;
>     freesurfer:fs_000556 "0.68"^^xsd:float ;
>     freesurfer:fs_000557 "0.119"^^xsd:float ;
>     freesurfer:fs_000558 "0.027"^^xsd:float ;
>     freesurfer:fs_000559 24 ;
>     freesurfer:fs_000560 "2.4"^^xsd:float ;
>     freesurfer:fs_000561 4822 ;
>     freesurfer:fs_000562 3228 ;
>     freesurfer:fs_000563 12783 ;
>     freesurfer:fs_000564 "3.106"^^xsd:float ;
>     freesurfer:fs_000565 "0.703"^^xsd:float ;
>     freesurfer:fs_000566 "0.11"^^xsd:float ;
>     freesurfer:fs_000567 "0.024"^^xsd:float ;
>     freesurfer:fs_000568 49 ;
>     freesurfer:fs_000569 "4.3"^^xsd:float ;
>     freesurfer:fs_000570 997 ;
>     freesurfer:fs_000571 617 ;
>     freesurfer:fs_000572 1665 ;
>     freesurfer:fs_000573 "2.338"^^xsd:float ;
>     freesurfer:fs_000574 "0.641"^^xsd:float ;
>     freesurfer:fs_000575 "0.075"^^xsd:float ;
>     freesurfer:fs_000576 "0.014"^^xsd:float ;
>     freesurfer:fs_000577 5 ;
>     freesurfer:fs_000578 "0.5"^^xsd:float ;
>     freesurfer:fs_000579 2456 ;
>     freesurfer:fs_000580 1475 ;
>     freesurfer:fs_000581 3499 ;
>     freesurfer:fs_000582 "2.22"^^xsd:float ;
>     freesurfer:fs_000583 "0.607"^^xsd:float ;
>     freesurfer:fs_000584 "0.118"^^xsd:float ;
>     freesurfer:fs_000585 "0.035"^^xsd:float ;
>     freesurfer:fs_000586 27 ;
>     freesurfer:fs_000587 "3.7"^^xsd:float ;
>     freesurfer:fs_000588 2324 ;
>     freesurfer:fs_000589 1556 ;
>     freesurfer:fs_000590 5275 ;
>     freesurfer:fs_000591 "2.897"^^xsd:float ;
>     freesurfer:fs_000592 "0.496"^^xsd:float ;
>     freesurfer:fs_000593 "0.099"^^xsd:float ;
>     freesurfer:fs_000594 "0.021"^^xsd:float ;
>     freesurfer:fs_000595 18 ;
>     freesurfer:fs_000596 "1.6"^^xsd:float ;
>     freesurfer:fs_000597 1136 ;
>     freesurfer:fs_000598 785 ;
>     freesurfer:fs_000599 3008 ;
>     freesurfer:fs_000600 "3.069"^^xsd:float ;
>     freesurfer:fs_000601 "0.611"^^xsd:float ;
>     freesurfer:fs_000602 "0.137"^^xsd:float ;
>     freesurfer:fs_000603 "0.036"^^xsd:float ;
>     freesurfer:fs_000604 16 ;
>     freesurfer:fs_000605 "1.7"^^xsd:float ;
>     freesurfer:fs_000606 2026 ;
>     freesurfer:fs_000607 1419 ;
>     freesurfer:fs_000608 4604 ;
>     freesurfer:fs_000609 "2.878"^^xsd:float ;
>     freesurfer:fs_000610 "0.49"^^xsd:float ;
>     freesurfer:fs_000611 "0.109"^^xsd:float ;
>     freesurfer:fs_000612 "0.022"^^xsd:float ;
>     freesurfer:fs_000613 19 ;
>     freesurfer:fs_000614 "1.8"^^xsd:float ;
>     freesurfer:fs_000615 1604 ;
>     freesurfer:fs_000616 1252 ;
>     freesurfer:fs_000617 1401 ;
>     freesurfer:fs_000618 "1.343"^^xsd:float ;
>     freesurfer:fs_000619 "0.285"^^xsd:float ;
>     freesurfer:fs_000620 "0.159"^^xsd:float ;
>     freesurfer:fs_000621 "0.042"^^xsd:float ;
>     freesurfer:fs_000622 21 ;
>     freesurfer:fs_000623 "3.3"^^xsd:float ;
>     freesurfer:fs_000624 6684 ;
>     freesurfer:fs_000625 4121 ;
>     freesurfer:fs_000626 10399 ;
>     freesurfer:fs_000627 "2.198"^^xsd:float ;
>     freesurfer:fs_000628 "0.699"^^xsd:float ;
>     freesurfer:fs_000629 "0.11"^^xsd:float ;
>     freesurfer:fs_000630 "0.026"^^xsd:float ;
>     freesurfer:fs_000631 75 ;
>     freesurfer:fs_000632 "6.7"^^xsd:float ;
>     freesurfer:fs_000633 1813 ;
>     freesurfer:fs_000634 1309 ;
>     freesurfer:fs_000635 3353 ;
>     freesurfer:fs_000636 "2.385"^^xsd:float ;
>     freesurfer:fs_000637 "0.744"^^xsd:float ;
>     freesurfer:fs_000638 "0.136"^^xsd:float ;
>     freesurfer:fs_000639 "0.029"^^xsd:float ;
>     freesurfer:fs_000640 27 ;
>     freesurfer:fs_000641 "2.4"^^xsd:float ;
>     freesurfer:fs_000642 8164 ;
>     freesurfer:fs_000643 5296 ;
>     freesurfer:fs_000644 15471 ;
>     freesurfer:fs_000645 "2.671"^^xsd:float ;
>     freesurfer:fs_000646 "0.679"^^xsd:float ;
>     freesurfer:fs_000647 "0.112"^^xsd:float ;
>     freesurfer:fs_000648 "0.027"^^xsd:float ;
>     freesurfer:fs_000649 68 ;
>     freesurfer:fs_000650 "8.9"^^xsd:float ;
>     freesurfer:fs_000651 5464 ;
>     freesurfer:fs_000652 3764 ;
>     freesurfer:fs_000653 9198 ;
>     freesurfer:fs_000654 "2.336"^^xsd:float ;
>     freesurfer:fs_000655 "0.503"^^xsd:float ;
>     freesurfer:fs_000656 "0.121"^^xsd:float ;
>     freesurfer:fs_000657 "0.027"^^xsd:float ;
>     freesurfer:fs_000658 58 ;
>     freesurfer:fs_000659 "6.1"^^xsd:float ;
>     freesurfer:fs_000660 1063 ;
>     freesurfer:fs_000661 790 ;
>     freesurfer:fs_000662 2933 ;
>     freesurfer:fs_000663 "2.956"^^xsd:float ;
>     freesurfer:fs_000664 "0.796"^^xsd:float ;
>     freesurfer:fs_000665 "0.128"^^xsd:float ;
>     freesurfer:fs_000666 "0.032"^^xsd:float ;
>     freesurfer:fs_000667 16 ;
>     freesurfer:fs_000668 "1.5"^^xsd:float ;
>     freesurfer:fs_000669 8779 ;
>     freesurfer:fs_000670 6198 ;
>     freesurfer:fs_000671 18701 ;
>     freesurfer:fs_000672 "2.652"^^xsd:float ;
>     freesurfer:fs_000673 "0.573"^^xsd:float ;
>     freesurfer:fs_000674 "0.124"^^xsd:float ;
>     freesurfer:fs_000675 "0.027"^^xsd:float ;
>     freesurfer:fs_000676 99 ;
>     freesurfer:fs_000677 "9.9"^^xsd:float ;
>     freesurfer:fs_000678 11174 ;
>     freesurfer:fs_000679 7544 ;
>     freesurfer:fs_000680 26065 ;
>     freesurfer:fs_000681 "2.981"^^xsd:float ;
>     freesurfer:fs_000682 "0.6"^^xsd:float ;
>     freesurfer:fs_000683 "0.119"^^xsd:float ;
>     freesurfer:fs_000684 "0.027"^^xsd:float ;
>     freesurfer:fs_000685 111 ;
>     freesurfer:fs_000686 "12.1"^^xsd:float ;
>     freesurfer:fs_000687 7924 ;
>     freesurfer:fs_000688 5150 ;
>     freesurfer:fs_000689 13067 ;
>     freesurfer:fs_000690 "2.314"^^xsd:float ;
>     freesurfer:fs_000691 "0.508"^^xsd:float ;
>     freesurfer:fs_000692 "0.121"^^xsd:float ;
>     freesurfer:fs_000693 "0.028"^^xsd:float ;
>     freesurfer:fs_000694 79 ;
>     freesurfer:fs_000695 "8.7"^^xsd:float ;
>     freesurfer:fs_000696 6202 ;
>     freesurfer:fs_000697 4098 ;
>     freesurfer:fs_000698 14938 ;
>     freesurfer:fs_000699 "3.084"^^xsd:float ;
>     freesurfer:fs_000700 "0.782"^^xsd:float ;
>     freesurfer:fs_000701 "0.095"^^xsd:float ;
>     freesurfer:fs_000702 "0.018"^^xsd:float ;
>     freesurfer:fs_000703 48 ;
>     freesurfer:fs_000704 "4.6"^^xsd:float ;
>     freesurfer:fs_000705 6145 ;
>     freesurfer:fs_000706 4167 ;
>     freesurfer:fs_000707 12821 ;
>     freesurfer:fs_000708 "2.751"^^xsd:float ;
>     freesurfer:fs_000709 "0.555"^^xsd:float ;
>     freesurfer:fs_000710 "0.118"^^xsd:float ;
>     freesurfer:fs_000711 "0.024"^^xsd:float ;
>     freesurfer:fs_000712 62 ;
>     freesurfer:fs_000713 "6.2"^^xsd:float ;
>     freesurfer:fs_000714 396 ;
>     freesurfer:fs_000715 292 ;
>     freesurfer:fs_000716 1416 ;
>     freesurfer:fs_000717 "3.25"^^xsd:float ;
>     freesurfer:fs_000718 "0.744"^^xsd:float ;
>     freesurfer:fs_000719 "0.152"^^xsd:float ;
>     freesurfer:fs_000720 "0.045"^^xsd:float ;
>     freesurfer:fs_000721 7 ;
>     freesurfer:fs_000722 "0.5"^^xsd:float ;
>     freesurfer:fs_000723 570 ;
>     freesurfer:fs_000724 464 ;
>     freesurfer:fs_000725 2607 ;
>     freesurfer:fs_000726 "3.6"^^xsd:float ;
>     freesurfer:fs_000727 "0.727"^^xsd:float ;
>     freesurfer:fs_000728 "0.131"^^xsd:float ;
>     freesurfer:fs_000729 "0.034"^^xsd:float ;
>     freesurfer:fs_000730 8 ;
>     freesurfer:fs_000731 "0.7"^^xsd:float ;
>     freesurfer:fs_000732 964 ;
>     freesurfer:fs_000733 623 ;
>     freesurfer:fs_000734 1844 ;
>     freesurfer:fs_000735 "2.56"^^xsd:float ;
>     freesurfer:fs_000736 "0.385"^^xsd:float ;
>     freesurfer:fs_000737 "0.097"^^xsd:float ;
>     freesurfer:fs_000738 "0.026"^^xsd:float ;
>     freesurfer:fs_000739 8 ;
>     freesurfer:fs_000740 "0.8"^^xsd:float ;
>     freesurfer:fs_000741 3756 ;
>     freesurfer:fs_000742 2418 ;
>     freesurfer:fs_000743 7824 ;
>     freesurfer:fs_000744 "3.04"^^xsd:float ;
>     freesurfer:fs_000745 "1.011"^^xsd:float ;
>     freesurfer:fs_000746 "0.097"^^xsd:float ;
>     freesurfer:fs_000747 "0.028"^^xsd:float ;
>     freesurfer:fs_000748 30 ;
>     freesurfer:fs_000749 "3.6"^^xsd:float .
> 
> niiri:a1b7d670-603a-11f0-88dc-a6497c4a616c a prov:Agent,
331c343,344
<     ns3:NIDM_0000164 ns1: .
---
>     nidm:NIDM_0000164 freesurfer:reconall ;
>     prov:hadVersion "version:..." .
333,335c346,354
< niiri:a3a8c4f0-1c70-11f0-a1cc-d404e674afa0 a prov:Agent,
<         prov:Person ;
<     ns2:src_subject_id "sub-0051465" .
---
> niiri:a1b7d7f6-603a-11f0-88dc-a6497c4a616c a prov:Activity ;
>     dcterms:description "FREESURFER RECONALL segmentation statistics" ;
>     prov:qualifiedAssociation [ a prov:Association ;
>             prov:agent niiri:a1b7d670-603a-11f0-88dc-a6497c4a616c ;
>             prov:hadRole nidm:NIDM_0000164 ],
>         [ a prov:Association ;
>             prov:agent niiri:a3a8c4f0-1c70-11f0-a1cc-d404e674afa0 ;
>             prov:hadRole sio:Subject ] ;
>     prov:used niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 .
337c356,358
< niiri:a3a8c748-1c70-11f0-a1cc-d404e674afa0 a ns3:Project .
---
> niiri:a3a8c2de-1c70-11f0-a1cc-d404e674afa0 a prov:Agent,
>         prov:SoftwareAgent ;
>     nidm:NIDM_0000164 freesurfer: .
339,343c360
< niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 a ns3:MagneticResonanceImaging,
<         ns3:T1Weighted ;
<     ns3:filename "sub-0051465_T1w.nii.gz" ;
<     ns3:hasImageUsageType ns3:Anatomical ;
<     prov:Location "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/inputs/data/BIDS/sub-0051465/anat/sub-0051465_T1w.nii.gz" .
---
> niiri:a3a8c748-1c70-11f0-a1cc-d404e674afa0 a nidm:Project .
350c367
<             prov:hadRole ns3:NIDM_0000164 ],
---
>             prov:hadRole nidm:NIDM_0000164 ],
353c370
<             prov:hadRole <http://semanticscience.org/ontology/sio.owl#Subject> ] ;
---
>             prov:hadRole sio:Subject ] ;
356,374c373,391
<             prov:hadRole ns3:T1WeightedRole ] ;
<     ns1:AnnotationFile "../label/lh.aparc.annot" ;
<     ns1:AnnotationFileTimeStamp "2025/04/18 11:45:30" ;
<     ns1:BrainVolStatsFixed-NotNeeded "because voxelvolume=1mm3" ;
<     ns1:CreationTime "2025/04/18-16:09:54-GMT" ;
<     ns1:NTableCols "10" ;
<     ns1:SUBJECTS_DIR "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/outputs/freesurfer_bidsapp/freesurfer" ;
<     ns1:Table "of FreeSurfer cortical parcellation anatomical statistics" ;
<     ns1:anatomy_type "surface" ;
<     ns1:cmdline "mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-0051465 lh white" ;
<     ns1:cvs_version "8.0.0-beta" ;
<     ns1:generating_program "mris_anatomical_stats" ;
<     ns1:hemi "lh" ;
<     ns1:hostname "node1601" ;
<     ns1:machine "x86_64" ;
<     ns1:mrisurf.c-cvs_version "8.0.0-beta" ;
<     ns1:subjectname "sub-0051465" ;
<     ns1:sysname "Linux" ;
<     ns1:user "yibei" .
---
>             prov:hadRole nidm:T1WeightedRole ] ;
>     freesurfer:AnnotationFile "../label/lh.aparc.annot" ;
>     freesurfer:AnnotationFileTimeStamp "2025/04/18 11:45:30" ;
>     freesurfer:BrainVolStatsFixed-NotNeeded "because voxelvolume=1mm3" ;
>     freesurfer:CreationTime "2025/04/18-16:09:54-GMT" ;
>     freesurfer:NTableCols "10" ;
>     freesurfer:SUBJECTS_DIR "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/outputs/freesurfer_bidsapp/freesurfer" ;
>     freesurfer:Table "of FreeSurfer cortical parcellation anatomical statistics" ;
>     freesurfer:anatomy_type "surface" ;
>     freesurfer:cmdline "mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab sub-0051465 lh white" ;
>     freesurfer:cvs_version "8.0.0-beta" ;
>     freesurfer:generating_program "mris_anatomical_stats" ;
>     freesurfer:hemi "lh" ;
>     freesurfer:hostname "node1601" ;
>     freesurfer:machine "x86_64" ;
>     freesurfer:mrisurf.c-cvs_version "8.0.0-beta" ;
>     freesurfer:subjectname "sub-0051465" ;
>     freesurfer:sysname "Linux" ;
>     freesurfer:user "yibei" .
376c393
< niiri:d3a8c7d4-1c70-11f0-a1cc-d404e674afa0 a ns3:Session,
---
> niiri:d3a8c7d4-1c70-11f0-a1cc-d404e674afa0 a nidm:Session,
379a397,410
> niiri:a3a8c4f0-1c70-11f0-a1cc-d404e674afa0 a prov:Agent,
>         prov:Person ;
>     ns2:src_subject_id "sub-0051465" .
> 
> niiri:b3a8b870-1c70-11f0-a1cc-d404e674afa0 a nidm:AcquisitionObject,
>         nidm:MagneticResonanceImaging,
>         nidm:T1Weighted,
>         prov:Entity ;
>     crypto:sha512 "f249d6bffdf68b0690b20698d834231ae054443fa5e2b1168cba72999f5617cad07ed55cfd4cdf8fbe6ba81158d1020dc23adb2ca222ebd2495f69f2b1efbcba" ;
>     nidm:filename "sub-0051465_T1w.nii.gz" ;
>     nidm:hasImageUsageType nidm:Anatomical ;
>     nfo:filename "bids:abide-Caltech:sub-0051493/anat/sub-0051493_T1w.nii.gz" ;
>     prov:Location "/orcd/scratch/bcs/001/yibei/freesurfer_compute/job-65216786-10-sub-0051465/ds/inputs/data/BIDS/sub-0051465/anat/sub-0051465_T1w.nii.gz" .```
</details>

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3 participants
@djarecka @yibeichan @satra