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Data Preparation

Avgoustinos Vouros edited this page Jun 29, 2016 · 15 revisions

Contents

  1. Setting up the data from Ethovision
  2. The CSV data format
### Setting up the data from Ethovision ###
  1. Open Ethovision and select File-->Open Workspace.

    data_input_1

  2. On the dialogue box navigate to the folder containing the Ethovision's EWS file and open it.

    data_input_2

  3. Each Workspace file differ. The one used for this example contains data from three separate days, learning day 1 to learning day 3 (with bold letters the selected 'active' dataset is indicated).

    data_input_3

  4. To export the data first press the button 'Analyze Data' (the last button of the main tab).

    data_input_4

  5. Afterwards select File-->Export-->Parameters & Raw Data.

    data_input_5

  6. A dialogue box will appear. Fill it as below:

    • File Prefix: press 'Browse...' and navigate to a folder were you want the data to be extracted then give an appropriate prefix name for example 'day1'.
    • Save as Type: select 'Comma Separated Values (*.csv)'.
    • Include: tick all the checkboxes

    data_input_6

  7. Repeat steps 5 and 6 for the rest of the data but each time provide a different prefix name to avoid overwriting your previous exported data. Note, in order to select the next dataset for exporting right-click on its name and select 'Set as Active'.

  8. Assuming that there are three datasets and the selected prefixes were 'day1', 'day2' and 'day3' the folder selected for exporting should contain CSV files with the prefix 'day1_', 'day2_' and 'day3_' followed by a unique numeric id.

    data_input_7

### The CSV data format ###

The CSV data format differ between the experiments but each exported Workspace keeps the same format over all the exported CSV files. In general each set of CSVs should contain the following:

  • a cell indicating the animal id followed by a cell which contains a numeric value,
  • a series of cells recorded time, x, y. Cells that comes below them indicate the location of the animal over time.

data_format_1

The user will need to provide the cells indicating the animal id, trial number, recorded time, x and y later on the main GUI.

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