working on ggbio and shiny apps page

Author: dicook

0-preamble/index.Rmd

@@ -102,6 +102,32 @@ Create a project for this workshop, in the directory where you downloaded the fi
 - It combines the core syntax of __markdown__ (an easy-to-write plain text format) __with embedded R code chunks__ that are run so their output can be included in the final document. 
 - R Markdown documents are fully reproducible (they can be automatically regenerated whenever underlying R code or data changes).
 
+## Installing packages
+
+From CRAN
+
+```{r eval=FALSE}
+install.packages("ggenealogy")
+```
+
+##
+
+From bioconductor
+
+```{r eval=FALSE}
+source("https://bioconductor.org/biocLite.R")
+biocLite("ggbio")
+```
+
+##
+
+From github repos
+
+```{r eval=FALSE}
+devtools::install_github("heike/gglogo")
+devtools::install_github("haleyjeppson/ggmosaic")
+```
+
 ## Resources
 
 

0-preamble/index.html

@@ -10,7 +10,7 @@
 
 
 
-  <meta name="date" content="2016-06-26" />
+  <meta name="date" content="2016-07-06" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1">
   <meta name="apple-mobile-web-app-capable" content="yes">
@@ -91,7 +91,7 @@
       <h1 data-config-title><!-- populated from slide_config.json --></h1>
       <h2 data-config-subtitle><!-- populated from slide_config.json --></h2>
       <p data-config-presenter><!-- populated from slide_config.json --></p>
-            <p style="margin-top: 6px; margin-left: -2px;">2016-06-26</p>
+            <p style="margin-top: 6px; margin-left: -2px;">2016-07-06</p>
           </hgroup>
   </slide>
 
@@ -190,6 +190,26 @@ <h2 data-config-subtitle><!-- populated from slide_config.json --></h2>
 <li><p>R Markdown documents are fully reproducible (they can be automatically regenerated whenever underlying R code or data changes).</p></li>
 </ul>
 
+</article></slide><slide class=''><hgroup><h2>Installing packages</h2></hgroup><article  id="installing-packages">
+
+<p>From CRAN</p>
+
+<pre class = 'prettyprint lang-r'>install.packages(&quot;ggenealogy&quot;)</pre>
+
+</article></slide><slide class=''><hgroup><h2></h2></hgroup><article  id="section">
+
+<p>From bioconductor</p>
+
+<pre class = 'prettyprint lang-r'>source(&quot;https://bioconductor.org/biocLite.R&quot;)
+biocLite(&quot;ggbio&quot;)</pre>
+
+</article></slide><slide class=''><hgroup><h2></h2></hgroup><article  id="section-1">
+
+<p>From github repos</p>
+
+<pre class = 'prettyprint lang-r'>devtools::install_github(&quot;heike/gglogo&quot;)
+devtools::install_github(&quot;haleyjeppson/ggmosaic&quot;)</pre>
+
 </article></slide><slide class=''><hgroup><h2>Resources</h2></hgroup><article  id="resources">
 
 <ul>