diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 34273681..53a49fb9 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/mwouts/jupytext
-    rev: v1.16.4b
+    rev: v1.16.6
     hooks:
       - id: jupytext
         args: [--sync]
diff --git a/examples/Advanced_Sampling_Introduction.md b/examples/Advanced_Sampling_Introduction.md
index f7f056f6..e94f6b87 100644
--- a/examples/Advanced_Sampling_Introduction.md
+++ b/examples/Advanced_Sampling_Introduction.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/Installing_a_PySAGES_Environment.md b/examples/Installing_a_PySAGES_Environment.md
index 419707b1..48d35c64 100644
--- a/examples/Installing_a_PySAGES_Environment.md
+++ b/examples/Installing_a_PySAGES_Environment.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/hoomd-blue/ann/Butane_ANN.md b/examples/hoomd-blue/ann/Butane_ANN.md
index 11a703f1..c7adbcf3 100644
--- a/examples/hoomd-blue/ann/Butane_ANN.md
+++ b/examples/hoomd-blue/ann/Butane_ANN.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/hoomd-blue/cff/Butane_CFF.md b/examples/hoomd-blue/cff/Butane_CFF.md
index aa247399..e453be39 100644
--- a/examples/hoomd-blue/cff/Butane_CFF.md
+++ b/examples/hoomd-blue/cff/Butane_CFF.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/hoomd-blue/funn/Butane_FUNN.md b/examples/hoomd-blue/funn/Butane_FUNN.md
index 0d923a1d..b3c04ac5 100644
--- a/examples/hoomd-blue/funn/Butane_FUNN.md
+++ b/examples/hoomd-blue/funn/Butane_FUNN.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md
index 1806acd3..aa1d0b3d 100644
--- a/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md
+++ b/examples/hoomd-blue/harmonic_bias/Harmonic_Bias.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md
index bc2444e3..1bc432c2 100644
--- a/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md
+++ b/examples/hoomd-blue/spectral_abf/Butane-SpectralABF.md
@@ -6,7 +6,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     language: python
diff --git a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md
index f7373819..3b317f44 100644
--- a/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md
+++ b/examples/hoomd-blue/umbrella_integration/Umbrella_Integration.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/openmm/harmonic_bias/Harmonic_Bias.md b/examples/openmm/harmonic_bias/Harmonic_Bias.md
index 85f6cecd..d3ffaa00 100644
--- a/examples/openmm/harmonic_bias/Harmonic_Bias.md
+++ b/examples/openmm/harmonic_bias/Harmonic_Bias.md
@@ -6,7 +6,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     language: python
diff --git a/examples/openmm/metad/Metadynamics-ADP.md b/examples/openmm/metad/Metadynamics-ADP.md
index 17e20aee..758c462a 100644
--- a/examples/openmm/metad/Metadynamics-ADP.md
+++ b/examples/openmm/metad/Metadynamics-ADP.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3
diff --git a/examples/openmm/metad/nacl/Metadynamics_NaCl.md b/examples/openmm/metad/nacl/Metadynamics_NaCl.md
index fe04f726..15a20f23 100644
--- a/examples/openmm/metad/nacl/Metadynamics_NaCl.md
+++ b/examples/openmm/metad/nacl/Metadynamics_NaCl.md
@@ -6,7 +6,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3 (ipykernel)
     language: python
diff --git a/examples/openmm/spectral_abf/ADP_SpectralABF.md b/examples/openmm/spectral_abf/ADP_SpectralABF.md
index 91b6edad..697c2472 100644
--- a/examples/openmm/spectral_abf/ADP_SpectralABF.md
+++ b/examples/openmm/spectral_abf/ADP_SpectralABF.md
@@ -7,7 +7,7 @@ jupyter:
       extension: .md
       format_name: markdown
       format_version: '1.3'
-      jupytext_version: 1.16.4
+      jupytext_version: 1.16.6
   kernelspec:
     display_name: Python 3
     name: python3