Update MAP with latest Auto SVRTK reconstruction pipeline

[tomaroberts]

• Reconstruction script: https://github.com/SVRTK/auto-svrtk-scripts/blob/main/auto-brain-reconstruction.sh
  • Input arguments: [full_path_to_folder_with_input_stacks] [full_path_to_the_outputs] 1 2.5 0.8 1
• Model weights: https://gin.g-node.org/SVRTK/fetal_mri_network_weights/src/master

Basically need to:

• update Dockerfile to pull newest weights
• Alter SVRTK operator to use new .bash script
• Check file pathing the same – nb: final file is called reo-SVR-output-brain.nii.gz, which is probably easiest to rename SVR-output.nii.gz for purposes of MAP.