Merge branch 'refs/heads/master' into add-metadata-types-endpoint

Author: Ingvord

.github/workflows/release-and-publish-sdk.yml

@@ -121,7 +121,7 @@ jobs:
 
       - uses: actions/upload-artifact@v4
         with:
-          name: swagger-schema
+          name: swagger-schema-${{ github.sha }}
           path: ./swagger-schema.json
 
   generate-upload-sdk:
@@ -139,7 +139,7 @@ jobs:
 
       - uses: actions/download-artifact@v4
         with:
-          name: swagger-schema
+          name: swagger-schema-${{ github.sha }}
           path: .
 
       - name: Generate Client
@@ -215,7 +215,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ env.PYTHON_VERSION }}
 

.github/workflows/upload-sdk-artifact.yml

@@ -39,7 +39,7 @@ jobs:
 
       - uses: actions/upload-artifact@v4
         with:
-          name: swagger-schema
+          name: swagger-schema-${{ github.sha }}
           path: ./swagger-schema.json
 
   generate-and-upload-sdk:
@@ -56,7 +56,7 @@ jobs:
 
       - uses: actions/download-artifact@v4
         with:
-          name: swagger-schema
+          name: swagger-schema-${{ github.sha }}
           path: .
 
       - name: Generate Client

README.md

@@ -6,6 +6,7 @@
 
 [![Test](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/test.yml/badge.svg)](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/test.yml)
 [![Deploy](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/deploy.yml/badge.svg)](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/deploy.yml)
+[![Generate and upload latest SDK artifacts](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/upload-sdk-artifact.yml/badge.svg?branch=master)](https://github.com/SciCatProject/scicat-backend-next/actions/workflows/upload-sdk-artifact.yml)
 [![DeepScan grade](https://deepscan.io/api/teams/8394/projects/19251/branches/494247/badge/grade.svg)](https://deepscan.io/dashboard#view=project&tid=8394&pid=19251&bid=494247)
 [![Known Vulnerabilities](https://snyk.io/test/github/SciCatProject/scicat-backend-next/master/badge.svg?targetFile=package.json)](https://snyk.io/test/github/SciCatProject/scicat-backend-next/master?targetFile=package.json)
 

migrations/20240920111733-dataset-unified-schema.js

@@ -0,0 +1,47 @@
+module.exports = {
+  async up(db, client) {
+    // TODO write your migration here.
+    // See https://github.com/seppevs/migrate-mongo/#creating-a-new-migration-script
+    // Example:
+    // await db.collection('albums').updateOne({artist: 'The Beatles'}, {$set: {blacklisted: true}});
+    await db.collection("Dataset").updateMany({}, [
+      {
+        $set: {
+          proposalIds: ["$proposalId"],
+          instrumentIds: ["$instrumentId"],
+          sampleIds: ["$sampleId"],
+        },
+      },
+    ]);
+    await db.collection("Dataset").updateMany({ type: "derived" }, [
+      {
+        $set: {
+          principalInvestigator: "$investigator",
+        },
+      },
+    ]);
+  },
+
+  async down(db, client) {
+    // TODO write the statements to rollback your migration (if possible)
+    // Example:
+    // await db.collection('albums').updateOne({artist: 'The Beatles'}, {$set: {blacklisted: false}});
+
+    await db.collection("Dataset").updateMany({}, [
+      {
+        $set: {
+          proposalId: "$proposalIds[0]",
+          instrumentId: "$instrumentId[0]",
+          sampleId: "$sampleId[0]",
+        },
+      },
+    ]);
+    await db.collection("Dataset").updateMany({ type: "derived" }, [
+      {
+        $set: {
+          investigator: "$principalInvestigator",
+        },
+      },
+    ]);
+  },
+};

package.json

@@ -26,7 +26,7 @@
     "test:debug": "node --inspect-brk -r tsconfig-paths/register -r ts-node/register node_modules/.bin/jest --runInBand",
     "test:api": "npm run test:api:jest --maxWorkers=50% && concurrently -k -s first \"wait-on http://localhost:3000/explorer/ && npm run test:api:mocha\" \"npm run start\"",
     "test:api:jest": "jest --config ./test/config/jest-e2e.json --maxWorkers=50%",
-    "test:api:mocha": "mocha --config ./test/config/.mocharc.json -r chai/register-should.js ",
+    "test:api:mocha": "mocha --config ./test/config/.mocharc.json -r chai/register-should.js",
     "prepare:local": "docker-compose -f CI/E2E/docker-compose-local.yaml --env-file CI/E2E/.env.elastic-search up  -d && cp functionalAccounts.json.test functionalAccounts.json"
   },
   "dependencies": {

src/config/configuration.ts

@@ -59,7 +59,7 @@ const configuration = () => {
 
   const config = {
     versions: {
-      api: "v3",
+      api: "3",
     },
     swaggerPath: process.env.SWAGGER_PATH || "explorer",
     loggerConfigs: jsonConfigMap.loggers || [defaultLogger],