SigProfilerPlotting/mkdocs.yml at master · SigProfilerSuite/SigProfilerPlotting · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
site_name: SigProfilerPlotting Documentation
site_description: Documentation for SigProfilerPlotting - a tool for plotting mutational signatures and patterns
site_author: SigProfilerSuite
site_url: https://sigprofilersuite.github.io/SigProfilerPlotting/

repo_name: SigProfilerSuite/SigProfilerPlotting
repo_url: https://github.com/SigProfilerSuite/SigProfilerPlotting

docs_dir: docs

use_directory_urls: false

exclude_docs: |
  osf_wiki/**

theme:
  name: material
  palette:
    - scheme: default
      primary: indigo
      accent: indigo
      toggle:
        icon: material/brightness-7
        name: Switch to dark mode
    - scheme: slate
      primary: indigo
      accent: indigo
      toggle:
        icon: material/brightness-4
        name: Switch to light mode
  features:
    - navigation.tabs
    - navigation.sections
    - navigation.expand
    - navigation.top
    - search.suggest
    - search.highlight
    - content.tabs.link
    - content.code.copy

plugins:
  - search

hooks:
  - mkdocs_hooks.py

markdown_extensions:
  - pymdownx.highlight:
      anchor_linenums: true
  - pymdownx.inlinehilite
  - pymdownx.snippets
  - pymdownx.superfences
  - admonition
  - pymdownx.details
  - tables
  - attr_list
  - def_list
  - pymdownx.tasklist:
      custom_checkbox: true

nav:
  - Home: index.md
  - Installation:
    - Python: Installation-Python.md
    - R: Installation-R.md
  - Usage:
    - Plotting Substitutions: Plotting-Substitutions.md
    - Plotting Indels: Plotting-Indels.md
    - Plotting Dinucleotides: Plotting-Dinucleotides.md
    - Plotting a Sample Portrait: Plotting-a-Sample-Portrait.md
    - Example Program: Example-Program.md

extra:
  social:
    - icon: fontawesome/brands/github
      link: https://github.com/SigProfilerSuite/SigProfilerPlotting

extra_css:
  - assets/stylesheets/extra.css