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v3 codebase review: registry, gapfilling, HPA parsers, editMiriam, getExchangeRxns, getGeneData #338

v3 codebase review: registry, gapfilling, HPA parsers, editMiriam, getExchangeRxns, getGeneData

v3 codebase review: registry, gapfilling, HPA parsers, editMiriam, getExchangeRxns, getGeneData #338

Triggered via pull request June 18, 2026 18:23
@edkerkedkerk
synchronize #650
docs/v3-review
Status Failure
Total duration 4m 38s
Artifacts

tests.yml

on: pull_request
Matrix: binary-tests
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1 error and 5 warnings
Function tests
This action finished successfully, but test results have status failure.
Binary download (macos-latest)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: matlab-actions/run-command@v2, matlab-actions/setup-matlab@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
findLeakMetaboliteInvalidDirectionErrors (tGapfilling) failed: tGapfilling#L0
test-results/results.xml [took 0s]
permuteModelReversesOrder (tManipulation) failed: tManipulation#L0
test-results/results.xml [took 0s]
Function tests
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: matlab-actions/run-command@v2, matlab-actions/setup-matlab@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Binary download (ubuntu-latest)
Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: matlab-actions/run-command@v2, matlab-actions/setup-matlab@v2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/