Updated version to 0.10.3.

Using TGACconanprocs 0.10.3.

Fixed bug to make use of kmer read analysis optional.

Author: Daniel Mapleson

pom.xml

@@ -5,7 +5,7 @@
 
 	<groupId>uk.ac.tgac.rampart</groupId>
 	<artifactId>rampart</artifactId>
-	<version>0.10.2</version>
+	<version>0.10.3</version>
 	<packaging>jar</packaging>
 
     <name>RAMPART</name>
@@ -455,7 +455,7 @@
         <dependency>
             <groupId>uk.ac.tgac.conan</groupId>
             <artifactId>tgac-conan-process-wrappers</artifactId>
-            <version>0.10.2</version>
+            <version>0.10.3</version>
             <exclusions>
                 <exclusion>
                     <groupId>commons-cli</groupId>

src/main/java/uk/ac/tgac/rampart/RampartPipeline.java

@@ -268,7 +268,7 @@ public Args(Element element, List<Library> libs, Organism organism, RampartJobFi
                             this.organism,
                             this.jobPrefix + "-analyse_mass",
                             this.kmerCalcArgs == null ? null : this.kmerCalcArgs.getResultFile(),
-                            this.analyseReadsArgs.isKmerAnalysis());
+                            this.analyseReadsArgs == null ? false : this.analyseReadsArgs.isKmerAnalysis());
 
             this.stages.setArgsIfPresent(RampartStage.ANALYSE_MASS, this.analyseMassArgs);
 
@@ -318,7 +318,7 @@ public Args(Element element, List<Library> libs, Organism organism, RampartJobFi
                             this.ampArgs == null ? null : this.ampArgs.getStageArgsList(),
                             this.organism,
                             this.jobPrefix + "-analyse_amp",
-                            this.analyseReadsArgs.isKmerAnalysis());
+                            this.analyseReadsArgs != null ? this.analyseReadsArgs.isKmerAnalysis() : false);
 
             this.stages.setArgsIfPresent(RampartStage.ANALYSE_AMP, this.analyseAmpArgs);