Docker "No such file or directory"

[sunqiwei123]

Hi there,
When I pull the latest version of dekupl-annot, it could work.
But I meet a problem, when I run, it is sain can not read the file.
the command is :
docker run --rm -v /Users/sunqiwei/software/dekupl-annotation/store/:/Users/sunqiwei/software/dekupl-annotation/data/
transipedia/dekupl-annotation index -g /Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.fa.gz
-a /Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.gff.gz -i /Users/sunqiwei/software/dekupl-annotation/data/index

Out put ：
[Step 1] Parsing FASTA file to load reference names
gzip: /Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.fa.gz: No such file or directory
Use of uninitialized value $prev_line in scalar chomp at /usr/local/lib/perl5/site_perl/5.34.0/DEkupl/Utils.pm line 315.
Genome length is 0
[Step 2] Saving gzipped FASTA file to index dir
cp: cannot stat '/Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.fa.gz': No such file or directory
[Step 3] Saving GFF file
gzip: /Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.gff.gz: No such file or directory
gzip: /Users/sunqiwei/software/dekupl-annotation/data/GRCh38-chr22.gff.gz: No such file or directory
Parsing annotations to verify GFF format
ERROR: No gene feature found in GFF file at /usr/local/lib/perl5/site_perl/5.34.0/DEkupl/App/Index.pm line 141.

But, the file is there! Could you help to solve this problems?

Best,
Qiwei

[sunqiwei123]

I tried
docker run -v pwd:pwd -w pwd -i -t transipedia/dekupl-annotation index -g /home/sunqiwei/dekupl-annot/data/references/GRCh38-chr22.fa.gz -a /home/sunqiwei/dekupl-annot/data/references/GRCh38-chr22.gff.gz -i /home/sunqiwei/index

it worked!