diff --git a/docs/AMET_Install_Guide_v16.md b/docs/AMET_Install_Guide_v16.md index fe8ce8c..67a6268 100644 --- a/docs/AMET_Install_Guide_v16.md +++ b/docs/AMET_Install_Guide_v16.md @@ -242,6 +242,7 @@ After you have installed the basic R software, AMET also requires the following * lubridate * maps * mapdata +* prism * plotly * plotrix * processx @@ -260,7 +261,7 @@ The easiest way to install R packages, is through the R package manager. Once R ``` > sudo R -> install.packages(c("akima","data.table","date","dplyr","dygraphs","fields","ggplot2","grid","gridExtra","hexbin","htmltools","htmlwidgets","lattice","latticeExtra","leaflet","leaflet.extras","leafpop","lubridate","maps","mapdata","plotly","plotrix","processx","reshape2","RColorBrewer","RMySQL","RMariaDB","stats","webshot","xts","pandoc"),repos="http://cran.r-project.org") +> install.packages(c("akima","data.table","date","dplyr","dygraphs","fields","ggplot2","grid","gridExtra","hexbin","htmltools","htmlwidgets","lattice","latticeExtra","leaflet","leaflet.extras","leafpop","lubridate","maps","mapdata","prism","plotly","plotrix","processx","reshape2","RColorBrewer","RMySQL","RMariaDB","stats","webshot","xts","pandoc"),repos="http://cran.r-project.org") ``` @@ -407,17 +408,17 @@ edit the sitecmp_dailyo3 Makefile > make |& tee make.log ``` -Note, the combine script directory contains a script called linkem that needs to be edited to point to your CMAQv5.5+ REPO directory to obtain the species definition files. +Note, the combine script directory contains a script called linkem that needs to be edited to point to your CMAQ REPO directory to obtain the species definition files. ``` cd $AMETBASE/tools_src/combine/scripts/spec_def_files vi linkem.csh ``` -Modify the set src = line to point to the CMAQv5.5+ Repository. +Modify the set src = line to point to the CMAQv6.0 Repository. ``` -set src = /path_to/CMAQ/CMAQv5.5+/build/CMAQ_REPO_v5.5+/CCTM/src/MECHS +set src = /path_to/CMAQ/CMAQv6.0/build/CMAQ_REPO_v6.0/CCTM/src/MECHS modify to the path for your CMAQ installation directory diff --git a/docs/AMET_QuickStart_Guide_v16.md b/docs/AMET_QuickStart_Guide_v16.md index 28a95ea..ccaf731 100644 --- a/docs/AMET_QuickStart_Guide_v16.md +++ b/docs/AMET_QuickStart_Guide_v16.md @@ -122,16 +122,16 @@ To compile these programs, edit the Makefile file that is located in the **src** > cd $AMETBASE/tools_src cd combine/src edit the combine Makefile -> Make +> make > cd bldoverlay/src edit the bldoverlay Makefile -> Make +> make > cd ../sitecmp/scr edit the sitecmp Makefile -> Make +> make > cd ../sitecmp_dailyo3/scr edit the sitecmp_dailyo3 Makefile -> Make +> make ``` *Note: AMETBASE is the root AMET installation directory on your system* @@ -209,6 +209,12 @@ Go to the output directory to view the plots: cd $AMETBASE/output/metExample_wrf/spatial_surface ``` +View the rmse of Temperature + +``` +okular metExample_wrf.rmse.T.20160701-20160801.pdf +``` + Use the following command to navigate to the air quality analysis example project directory: ``` @@ -217,12 +223,18 @@ cd $AMETBASE/scripts_analysis/aqExample Edit the AMETBASE and AMET\_DATABASE variables to be consistent with the AMET installation on your system. Save and run the script: ``` -./run_scatterplot.csh |& tee scatterplot.log +./run_scatterplot_density_ggplot.csh |& tee run_scatterplot_density_ggplot.log ``` Go to the output directory and view the plots: ``` -cd $AMETBASE/output/aqExample/scatterplot +cd $AMETBASE/output/aqExample/scatterplot_density_ggplot +``` + +View a density scatterplot of Temperature + +``` +okular metExample_wrf_T_1_scatterplot_density_ggplot.pdf ```