diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index a74eb35..58d730f 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -16,7 +16,7 @@ jobs: - name: Setup julia uses: julia-actions/setup-julia@v1 with: - version: '1.8.1' + version: '1.9' - run: julia -e 'using Pkg; pkg"add Run@0.1"' - run: julia -e 'using Run; Run.prepare_test()' - run: julia -e 'using Run; Run.test()' @@ -25,4 +25,4 @@ jobs: with: file: ./lcov.info flags: unittests - name: codecov-umbrella \ No newline at end of file + name: codecov-umbrella diff --git a/Project.toml b/Project.toml index f8010ac..00617a3 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "NestedGraphMakie" uuid = "6f6f4c20-e954-4c6d-a185-c2fbf890196e" authors = ["fchrstou and contributors"] -version = "0.1.1" +version = "0.1.2" [deps] Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" @@ -20,7 +20,7 @@ GraphMakie = "0.4, 0.5" Graphs = "1" Makie = "0.18, 0.19" MultiKDE = "0.1" -NestedGraphs = "0.1.1" +NestedGraphs = "0.1.1, 0.2" NetworkLayout = "0.4.5" julia = "1.8" diff --git a/test/Manifest.toml b/test/Manifest.toml index 8b4c478..3afd668 100644 --- a/test/Manifest.toml +++ b/test/Manifest.toml @@ -1,14 +1,18 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.5" +julia_version = "1.9.0" manifest_format = "2.0" project_hash = "2c02c2c9252026acb611e04dbd30abcee2a33d8f" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "16b6dbc4cf7caee4e1e75c49485ec67b667098a0" +deps = ["LinearAlgebra"] +git-tree-sha1 = "8bc0aaec0ca548eb6cf5f0d7d16351650c1ee956" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.3.1" +version = "1.3.2" +weakdeps = ["ChainRulesCore"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" [[deps.AbstractTrees]] git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" @@ -17,9 +21,13 @@ version = "0.4.4" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cc37d689f599e8df4f464b2fa3870ff7db7492ef" +git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.1" +version = "3.6.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" [[deps.Animations]] deps = ["Colors"] @@ -40,12 +48,6 @@ version = "0.2.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -[[deps.AttributeGraphs]] -deps = ["DocStringExtensions", "Graphs"] -git-tree-sha1 = "35f8c0b552ad5ec872078db8c5cf61119b01671a" -uuid = "d091dd56-f8c5-469d-b7f7-ff847498145f" -version = "0.2.0" - [[deps.Automa]] deps = ["Printf", "ScanByte", "TranscodingStreams"] git-tree-sha1 = "d50976f217489ce799e366d9561d56a98a30d7fe" @@ -88,10 +90,10 @@ uuid = "159f3aea-2a34-519c-b102-8c37f9878175" version = "1.0.5" [[deps.CairoMakie]] -deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "SHA", "SnoopPrecompile"] -git-tree-sha1 = "2aba202861fd2b7603beb80496b6566491229855" +deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"] +git-tree-sha1 = "bfc7d54b3c514f8015055e6ad0d5997da64d99fc" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.10.4" +version = "0.10.6" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -107,15 +109,9 @@ version = "0.5.1" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c6d890a52d2c4d55d326439580c3b8d0875a77d9" +git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.15.7" - -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "f84967c4497e0e1955f9a582c232b02847c5f589" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.7" +version = "1.16.0" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -148,21 +144,30 @@ uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.10" [[deps.Compat]] -deps = ["Dates", "LinearAlgebra", "UUIDs"] -git-tree-sha1 = "7a60c856b9fa189eb34f5f8a6f6b5529b7942957" +deps = ["UUIDs"] +git-tree-sha1 = "4e88377ae7ebeaf29a047aa1ee40826e0b708a5d" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.6.1" +version = "4.7.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.1+0" +version = "1.0.2+0" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "89a9db8d28102b094992472d333674bd1a83ce2a" +git-tree-sha1 = "738fec4d684a9a6ee9598a8bfee305b26831f28c" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.1" +version = "1.5.2" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" @@ -175,9 +180,9 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.DataAPI]] -git-tree-sha1 = "e8119c1a33d267e16108be441a287a6981ba1630" +git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.14.0" +version = "1.15.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -199,12 +204,6 @@ git-tree-sha1 = "9824894295b62a6a4ab6adf1c7bf337b3a9ca34c" uuid = "ab62b9b5-e342-54a8-a765-a90f495de1a6" version = "1.2.0" -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" - [[deps.Distances]] deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] git-tree-sha1 = "49eba9ad9f7ead780bfb7ee319f962c811c6d3b2" @@ -216,10 +215,18 @@ deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "13027f188d26206b9e7b863036f87d2f2e7d013a" +deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "Test"] +git-tree-sha1 = "db40d3aff76ea6a3619fdd15a8c78299221a2394" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.87" +version = "0.25.97" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" [[deps.DocStringExtensions]] deps = ["LibGit2"] @@ -245,10 +252,10 @@ uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.4+0" [[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.5.0+0" [[deps.Extents]] git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" @@ -269,9 +276,9 @@ version = "4.4.2+2" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "f9818144ce7c8c41edf5c4c179c684d92aa4d9fe" +git-tree-sha1 = "b4fbdd20c889804969571cc589900803edda16b7" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.6.0" +version = "1.7.1" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -281,18 +288,18 @@ version = "3.3.10+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "7be5f99f7d15578798f338f5433b6c432ea8037b" +git-tree-sha1 = "299dc33549f68299137e51e6d49a13b5b1da9673" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.0" +version = "1.16.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "fc86b4fd3eff76c3ce4f5e96e2fdfa6282722885" +git-tree-sha1 = "0b3b52afd0f87b0a3f5ada0466352d125c9db458" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.0.0" +version = "1.2.1" [[deps.FixedPointNumbers]] deps = ["Statistics"] @@ -342,15 +349,15 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "1cd7f0af1aa58abc02ea1d872953a97359cb87fa" +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.4" +version = "0.1.5" [[deps.GeoInterface]] deps = ["Extents"] -git-tree-sha1 = "0eb6de0b312688f852f347171aba888658e29f20" +git-tree-sha1 = "bb198ff907228523f3dee1070ceee63b9359b6ab" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.0" +version = "1.3.1" [[deps.GeometryBasics]] deps = ["EarCut_jll", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] @@ -371,10 +378,10 @@ uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" version = "2.74.0+2" [[deps.GraphMakie]] -deps = ["GeometryBasics", "Graphs", "LinearAlgebra", "Makie", "NetworkLayout", "PolynomialRoots", "StaticArrays"] -git-tree-sha1 = "72882a1584f367cfecc83e3e8a232c7720c262cd" +deps = ["DataStructures", "GeometryBasics", "Graphs", "LinearAlgebra", "Makie", "NetworkLayout", "PolynomialRoots", "SimpleTraits", "StaticArrays"] +git-tree-sha1 = "969a8bbc241342557197272b6bf31c24768ccedb" uuid = "1ecd5474-83a3-4783-bb4f-06765db800d2" -version = "0.5.3" +version = "0.5.5" [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] @@ -413,9 +420,9 @@ version = "2.8.1+1" [[deps.HypergeometricFunctions]] deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "432b5b03176f8182bd6841fbfc42c718506a2d5f" +git-tree-sha1 = "0ec02c648befc2f94156eaef13b0f38106212f3f" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.15" +version = "0.3.17" [[deps.ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] @@ -485,12 +492,6 @@ git-tree-sha1 = "16c0cc91853084cb5f58a78bd209513900206ce6" uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.4" -[[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "6667aadd1cdee2c6cd068128b3d226ebc4fb0c67" -uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.9" - [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -503,21 +504,15 @@ uuid = "f1662d9f-8043-43de-a69a-05efc1cc6ff4" version = "0.1.1" [[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" +git-tree-sha1 = "4ced6667f9974fc5c5943fa5e2ef1ca43ea9e450" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" +version = "1.8.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" -[[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] -git-tree-sha1 = "42c17b18ced77ff0be65957a591d34f4ed57c631" -uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.31" - [[deps.JLLWrappers]] deps = ["Preferences"] git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" @@ -544,9 +539,9 @@ version = "2.1.91+0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "4a9513ad756e712177bd342ba6c022b515ed8d76" +git-tree-sha1 = "90442c50e202a5cdf21a7899c66b240fdef14035" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.6" +version = "0.6.7" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -554,6 +549,12 @@ git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.1+0" +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "15.0.4+0" + [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" @@ -633,23 +634,33 @@ uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.36.0+0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "0a1b7c2863e44523180fdb3146534e265a91870b" +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.23" +version = "0.3.24" + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "2ce8695e1e699b68702c03402672a69f54b8aca9" +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2022.2.0+0" +version = "2023.1.0+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -658,10 +669,10 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.10" [[deps.Makie]] -deps = ["Animations", "Base64", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MakieCore", "Markdown", "Match", "MathTeXEngine", "MiniQhull", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "Printf", "Random", "RelocatableFolders", "Setfield", "Showoff", "SignedDistanceFields", "SnoopPrecompile", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "74657542dc85c3b72b8a5a9392d57713d8b7a999" +deps = ["Animations", "Base64", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "MiniQhull", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] +git-tree-sha1 = "a6695a632992a2e19ae1a1d0c9bee0e137e2f3cb" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.4" +version = "0.19.6" [[deps.MakieCore]] deps = ["Observables"] @@ -670,9 +681,9 @@ uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" version = "0.6.3" [[deps.MappedArrays]] -git-tree-sha1 = "e8b359ef06ec72e8c030463fe02efe5527ee5142" +git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" -version = "0.4.1" +version = "0.4.2" [[deps.Markdown]] deps = ["Base64"] @@ -692,13 +703,7 @@ version = "0.5.6" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.0+0" - -[[deps.MetaGraphs]] -deps = ["Graphs", "JLD2", "Random"] -git-tree-sha1 = "1130dbe1d5276cb656f6e1094ce97466ed700e5a" -uuid = "626554b9-1ddb-594c-aa3c-2596fe9399a5" -version = "0.7.2" +version = "2.28.2+0" [[deps.MiniQhull]] deps = ["QhullMiniWrapper_jll"] @@ -723,7 +728,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2022.2.1" +version = "2022.10.11" [[deps.MultiKDE]] deps = ["Distributions"] @@ -741,13 +746,21 @@ version = "1.0.2" deps = ["Colors", "DocStringExtensions", "GraphMakie", "Graphs", "Makie", "MultiKDE", "NestedGraphs", "NetworkLayout"] path = ".." uuid = "6f6f4c20-e954-4c6d-a185-c2fbf890196e" -version = "0.1.0" +version = "0.1.1" [[deps.NestedGraphs]] -deps = ["AbstractTrees", "AttributeGraphs", "DocStringExtensions", "Graphs", "MetaGraphs", "SimpleTraits"] -git-tree-sha1 = "1f970f8adf6a8989ddca950b39d7e6f895df00f4" +deps = ["AbstractTrees", "DocStringExtensions", "Graphs", "SimpleTraits"] +git-tree-sha1 = "f715fedd8183c9cc980e832e7155055ab70bf9a8" uuid = "03c36417-ddab-428a-818d-5359aee292ef" -version = "0.1.2" +version = "0.2.0" + + [deps.NestedGraphs.extensions] + NestedGraphsAttributeGraphsExt = "AttributeGraphs" + NestedGraphsMetaGraphsExt = "MetaGraphs" + + [deps.NestedGraphs.weakdeps] + AttributeGraphs = "d091dd56-f8c5-469d-b7f7-ff847498145f" + MetaGraphs = "626554b9-1ddb-594c-aa3c-2596fe9399a5" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] @@ -785,7 +798,7 @@ version = "1.3.5+1" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.20+0" +version = "0.3.21+4" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -805,10 +818,10 @@ uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.1+0" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9ff31d101d987eb9d66bd8b176ac7c277beccd09" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1aa4b74f80b01c6bc2b89992b861b5f210e665b5" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.20+0" +version = "1.1.21+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -830,7 +843,7 @@ version = "1.6.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.40.0+0" +version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -863,21 +876,21 @@ uuid = "36c8627f-9965-5494-a995-c6b170f724f3" version = "1.50.9+0" [[deps.Parsers]] -deps = ["Dates", "SnoopPrecompile"] -git-tree-sha1 = "478ac6c952fddd4399e71d4779797c538d0ff2bf" +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "4b2e829ee66d4218e0cef22c0a64ee37cf258c29" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.5.8" +version = "2.7.1" [[deps.Pixman_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.40.1+0" +version = "0.42.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.8.0" +version = "1.9.0" [[deps.PkgVersion]] deps = ["Pkg"] @@ -903,15 +916,15 @@ version = "1.0.0" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "2e47054ffe7d0a8872e977c0d09eb4b3d162ebde" +git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.0.2" +version = "1.1.2" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" +git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.3.0" +version = "1.4.0" [[deps.Printf]] deps = ["Unicode"] @@ -936,10 +949,10 @@ uuid = "460c41e3-6112-5d7f-b78c-b6823adb3f2d" version = "1.0.0+1" [[deps.Qhull_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "238dd7e2cc577281976b9681702174850f8d4cbc" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be2449911f4d6cfddacdf7efc895eceda3eee5c1" uuid = "784f63db-0788-585a-bace-daefebcd302b" -version = "8.0.1001+0" +version = "8.0.1003+0" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] @@ -962,9 +975,13 @@ version = "0.3.2" [[deps.Ratios]] deps = ["Requires"] -git-tree-sha1 = "6d7bb727e76147ba18eed998700998e17b8e4911" +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" -version = "0.4.4" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" @@ -1006,10 +1023,10 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SIMD]] -deps = ["SnoopPrecompile"] -git-tree-sha1 = "8b20084a97b004588125caebf418d8cab9e393d1" +deps = ["PrecompileTools"] +git-tree-sha1 = "0e270732477b9e551d884e6b07e23bb2ec947790" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.4.4" +version = "3.4.5" [[deps.ScanByte]] deps = ["Libdl", "SIMD"] @@ -1060,30 +1077,28 @@ git-tree-sha1 = "8fb59825be681d451c246a795117f317ecbcaa28" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.2" -[[deps.SnoopPrecompile]] -deps = ["Preferences"] -git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.3" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "a4ada03f999bd01b3a25dcaa30b2d929fe537e00" +git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.0" +version = "1.1.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "ef28127915f4229c971eb43f3fc075dd3fe91880" +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "7beb031cf8145577fbccacd94b8a8f4ce78428d3" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.2.0" +version = "2.3.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.StableHashTraits]] deps = ["CRC32c", "Compat", "Dates", "SHA", "Tables", "TupleTools", "UUIDs"] @@ -1099,9 +1114,9 @@ version = "0.1.1" [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "c262c8e978048c2b095be1672c9bee55b4619521" +git-tree-sha1 = "832afbae2a45b4ae7e831f86965469a24d1d8a83" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.24" +version = "1.5.26" [[deps.StaticArraysCore]] git-tree-sha1 = "6b7ba252635a5eff6a0b0664a41ee140a1c9e72a" @@ -1111,6 +1126,7 @@ version = "1.4.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.9.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1120,16 +1136,24 @@ version = "1.6.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.0" [[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] git-tree-sha1 = "f625d686d5a88bcd2b15cd81f18f98186fdc0c9a" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.3.0" + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" + + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StructArrays]] deps = ["Adapt", "DataAPI", "GPUArraysCore", "StaticArraysCore", "Tables"] git-tree-sha1 = "521a0e828e98bb69042fec1809c1b5a680eb7389" @@ -1140,10 +1164,15 @@ version = "0.6.15" deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" +[[deps.SuiteSparse_jll]] +deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "5.10.1+6" + [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.0" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1160,7 +1189,7 @@ version = "1.10.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" -version = "1.10.1" +version = "1.10.0" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -1288,7 +1317,7 @@ version = "1.4.0+3" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.12+3" +version = "1.2.13+0" [[deps.isoband_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1309,9 +1338,9 @@ uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" version = "0.15.1+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.7.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]