Dockerfile.ubuntu

FROM ubuntu:22.04

ENV DEBIAN_FRONTEND=noninteractive
RUN apt-get update

# # Tools
RUN apt-get install -y git tmux jq time patch

# # Compilers
RUN apt-get install -y gcc g++ clang gfortran

# # R check script requirements (psmisc for fuser, Xvfb for X11)
RUN apt-get install -y xvfb psmisc rsync

# # R build requirements
RUN apt-get install -y wget make automake cmake file python3 \
    libreadline-dev libx11-dev libxt-dev libz-dev libbz2-dev liblzma-dev \
    libpcre2-dev libcurl4-gnutls-dev libicu-dev tcl-dev tk-dev libtre-dev

# # R build requirements: docs needs pdflatex, so we get texlive and the fonts
RUN apt-get install -y texlive texlive-fonts-recommended

RUN apt-get install -y ffmpeg \
    libavcodec-dev libavdevice-dev libavfilter-dev libavformat-dev libpostproc-dev libswresample-dev libswscale-dev

# R package check requirements (ffmpeg-devel is from rpmfusion)
RUN apt-get install -y \
    libssl-dev libpng-dev libjpeg-dev libxml2-dev libgeos-dev libtiff-dev \
    libfontconfig-dev fftw-dev librsvg2-dev openjdk-11-jdk libprotobuf-dev \
    libsodium-dev libharfbuzz-dev libfribidi-dev libxslt1-dev libwebp-dev \
    libmagick++-dev libmysqlclient-dev libzstd-dev libjq-dev libgmp-dev libglpk-dev libgsl-dev \
    libnetcdf-dev libboost-all-dev libgpgme-dev libarchive-dev unixodbc-dev postgresql-server-dev-all \
    libzmq3-dev librdf0-dev rrdtool libopencv-dev libsasl2-dev liblz4-dev \
    libunwind-dev libpoppler-cpp-dev libpoppler-glib-dev libhiredis-dev libudunits2-dev \
    libmpfr-dev libopenmpi-dev ocl-icd-dev libssh-dev libtesseract-dev

# # tbb-devel

# # R ymd needs Rust
RUN apt-get install -y cargo

# # XXX The following software must be installed in the order listed for dependency reasons.

COPY install_lapack.sh /
RUN bash /install_lapack.sh

COPY install_jags.sh /
RUN bash /install_jags.sh

COPY install_symphony_clp.sh /
RUN bash /install_symphony_clp.sh

COPY install_sbml.sh /
RUN bash /install_sbml.sh

COPY install_quantlib.sh /
RUN bash /install_quantlib.sh

COPY install_openbugs.sh /
RUN bash /install_openbugs.sh

COPY install_proj.sh /
RUN bash /install_proj.sh

COPY install_gdal.sh /
RUN bash /install_gdal.sh

COPY install_mecab.sh /
RUN bash /install_mecab.sh

# # Non-Free: Oracle Free Use Terms and Conditions
# COPY install_oracle_oci.sh /
# RUN bash /install_oracle_oci.sh

# # SYMPHONY, Clp, JAGS installs *.pc to /usr/local/lib/pkgconfig
# # libSBML, Lapack, blas, GDAL, QuantLib (after CMake patch) installs *.pc to /usr/local/lib64/pkgconfig
# ENV PKG_CONFIG_PATH="/usr/local/lib64/pkgconfig/:/usr/local/lib/pkgconfig/:${PKG_CONFIG_PATH:-}"

# # Most libraries also install to /usr/local/lib64 and /usr/local/lib
# ENV LD_LIBRARY_PATH="/usr/local/lib64/:/usr/local/lib/:${LD_LIBRARY_PATH:-}"

# # CMD tail -f /dev/null