User procedure - missing packages (for OMERO)

[jlegrand62]

Hello,

After a bit of testing, I found that pillow was not installed following the "User procedure"...
I installed it with: conda install pillow (inside the activated conda environment).
Maybe it should be added to the recipe...

Also, trying to connect to the OMERO test database, I got the following Error:

  File "/home/jlegrand/miniconda2/envs/tissuelab-user/lib/python2.7/site-packages/tissuelab/omero/client.py", line 105, in connect
    from omero.gateway import BlitzGateway
  File "/home/jlegrand/miniconda2/envs/tissuelab-user/lib/python2.7/site-packages/tissuelab/omero/gateway_ome500_ice351/omero/__init__.py", line 17, in <module>
    import Ice
ImportError: No module named Ice

So I guess the "User" version does not have the possibility to connect to OMERO ?

Jo

[jlegrand62]

To add up to the list, I add to downgrade the VTK version to 6.3.0 so I could display images in the 3Dviewer.
By default the "User procedure" install the latest VTK version, in my case it was 7.0.0.

conda install -c conda-forge numpy scipy matplotlib vtk -y

Shoud probably be replaced by:
conda install -c conda-forge numpy scipy matplotlib vtk=6.3.0 -y

Jo