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env.yaml
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name: know2bio
channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2023.5.7=hbcca054_0
- ld_impl_linux-64=2.40=h41732ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgomp=12.2.0=h65d4601_19
- libnsl=2.0.0=h7f98852_0
- libsqlite=3.41.2=h2797004_1
- libuuid=2.38.1=h0b41bf4_0
- libzlib=1.2.13=h166bdaf_4
- ncurses=6.3=h27087fc_1
- openssl=3.1.0=hd590300_3
- pip=23.1.2=pyhd8ed1ab_0
- python=3.8.16=he550d4f_1_cpython
- readline=8.2=h8228510_1
- setuptools=67.7.2=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- unzip=6.0=h7f98852_3
- wheel=0.40.0=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zip=3.0=h7f98852_1
- pip:
- alembic==1.11.0
- asttokens==2.2.1
- backcall==0.2.0
- blessed==1.20.0
- certifi==2023.5.7
- charset-normalizer==3.1.0
- class-resolver==0.4.2
- click==8.1.3
- click-default-group==1.2.2
- cmaes==0.9.1
- cmake==3.26.3
- colorlog==6.7.0
- dataclasses-json==0.5.7
- decorator==5.1.1
- docdata==0.0.3
- executing==1.2.0
- filelock==3.12.0
- gpustat==1.1
- greenlet==2.0.2
- idna==3.4
- importlib-metadata==6.6.0
- importlib-resources==5.12.0
- ipython==8.12.2
- jedi==0.18.2
- jinja2==3.1.2
- joblib==1.2.0
- lit==16.0.3
- mako==1.2.4
- markupsafe==2.1.2
- marshmallow==3.19.0
- marshmallow-enum==1.5.1
- matplotlib-inline==0.1.6
- more-click==0.1.2
- more-itertools==9.1.0
- mpmath==1.3.0
- mypy-extensions==1.0.0
- networkx==3.1
- numpy==1.24.3
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-cupti-cu11==11.7.101
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- nvidia-cufft-cu11==10.9.0.58
- nvidia-curand-cu11==10.2.10.91
- nvidia-cusolver-cu11==11.4.0.1
- nvidia-cusparse-cu11==11.7.4.91
- nvidia-ml-py==11.525.112
- nvidia-nccl-cu11==2.14.3
- nvidia-nvtx-cu11==11.7.91
- optuna==3.1.1
- packaging==23.1
- pandas==2.0.1
- parso==0.8.3
- pexpect==4.8.0
- pickleshare==0.7.5
- prompt-toolkit==3.0.38
- protobuf==3.20.3
- psutil==5.9.5
- ptyprocess==0.7.0
- pure-eval==0.2.2
- pygments==2.15.1
- pykeen==1.10.2.dev0
- pystow==0.5.0
- python-dateutil==2.8.2
- pytz==2023.3
- pyyaml==6.0
- requests==2.30.0
- rexmex==0.1.3
- scikit-learn==1.2.2
- scipy==1.10.1
- six==1.16.0
- sqlalchemy==2.0.13
- stack-data==0.6.2
- sympy==1.12
- tabulate==0.9.0
- threadpoolctl==3.1.0
- torch==2.0.1
- torch-max-mem==0.0.5
- torch-ppr==0.0.8
- tqdm==4.65.0
- traitlets==5.9.0
- triton==2.0.0
- typing-extensions==4.5.0
- typing-inspect==0.8.0
- tzdata==2023.3
- urllib3==2.0.2
- wcwidth==0.2.6
- zipp==3.15.0
prefix: $USER_PATH/anaconda3/envs/know2bio