mcmc_clib/Makefile.template at master · a-kramer/mcmc_clib · GitHub

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CC=mpicc
CPP=c++

CPPFLAGS = -O2
CFLAGS = -O2 -march=native -std=gnu11 -D_GNU_SOURCE -Wall -fopenmp

LDFLAGS = `pkg-config --libs gsl glib-2.0`
IFLAGS = `pkg-config --cflags gsl glib-2.0`

FLAGS = `pkg-config --libs --cflags gsl glib-2.0 hdf5` -lhdf5_hl

MALA_SRC = ./src/mcmc/smmala.c ./src/mcmc/mcmc_kernel.c			\
./src/ode/ode_model.c ./src/mcmc/mv_norm.c		\
./src/mcmc/model_parameters_smmala.c ./src/app/normalisation_sd.c	\
./src/app/dynamic_array.c ./src/mcmc/smmala_posterior.c ./src/app/diagnosis_output.c \
./src/app/read_data_hdf5.c ./src/app/flatten.c

SB_SRC = ./src/sb/sbtab.c

VFGEN_SOURCE = `ls ./src/vfgen/*.cpp`

BIN=./bin
.PHONY: all

all: bin/ode_smmala bin/sbtab_import


bin/ode_smmala: ./src/app/ode_smmala.c $(MALA_SRC)
	$(CC)  $(MALA_SRC) -o $(BIN)/ode_smmala -ldl $(CFLAGS) src/app/ode_smmala.c -lsundials_cvodes -lsundials_nvecserial $(FLAGS)

vfgen:
	$(CPP) $(CPPFLAGS) $(VFGEN_SOURCE) -o vfgen $(IFLAGS) -DVERSION=\"2.4.1\" $(LDFLAGS) -lcln -lginac -lmxml -lpthread

%_cvs.c: %.xml
	./vfgen cvodes:sens=yes,func=yes $<

%.so: %_cvs.c
	$(CC) -shared -fPIC $(CFLAGS) -lm -o $@  $<

bin/sbtab_import: ./src/sb/import.c $(SB_SRC)
	$(CC) $(CFLAGS) $(SB_SRC) -o $(BIN)/sbtab_import ./src/sb/import.c -lm $(FLAGS)