last2gen_binary.log

PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --bfile snps_hwe_001
  --chr-set 30
  --keep fam_last2gen.txt
  --make-bed
  --out last2gen_binary

Hostname: gadi-cpu-clx-2571.gadi.nci.org.au
Working directory: /scratch/eu82/mn7316/Grid_search/Simulated_data/test_1
Start time: Wed Jan  5 18:31:24 2022

Random number seed: 1641367884
193098 MB RAM detected; reserving 96549 MB for main workspace.
7661 variants loaded from .bim file.
5550 samples (2550 males, 3000 females) loaded from .fam.
--keep: 2000 samples remaining.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 0 founders and 2000 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate in remaining samples is exactly 1.
7661 variants and 2000 samples pass filters and QC.
Note: No phenotypes present.
--make-bed to last2gen_binary.bed + last2gen_binary.bim + last2gen_binary.fam
... done.

End time: Wed Jan  5 18:31:24 2022