last2gen_maf_01.log

PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --bfile last2gen_binary
  --chr-set 30
  --maf 0.01
  --make-bed
  --nonfounders
  --out last2gen_maf_01

Hostname: gadi-cpu-clx-2571.gadi.nci.org.au
Working directory: /scratch/eu82/mn7316/Grid_search/Simulated_data/test_1
Start time: Wed Jan  5 18:31:24 2022

Random number seed: 1641367884
193098 MB RAM detected; reserving 96549 MB for main workspace.
7661 variants loaded from .bim file.
2000 samples (1000 males, 1000 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 0 founders and 2000 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
46 variants removed due to minor allele threshold(s)
(--maf/--max-maf/--mac/--max-mac).
7615 variants and 2000 samples pass filters and QC.
Note: No phenotypes present.
--make-bed to last2gen_maf_01.bed + last2gen_maf_01.bim + last2gen_maf_01.fam
... done.

End time: Wed Jan  5 18:31:24 2022