snp_binary.log

PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --chr-set 30
  --file Snps1
  --make-bed
  --noweb
  --out snp_binary

Hostname: gadi-cpu-clx-2571.gadi.nci.org.au
Working directory: /scratch/eu82/mn7316/Grid_search/Simulated_data/test_1
Start time: Wed Jan  5 18:30:47 2022

Note: --noweb has no effect since no web check is implemented yet.
Random number seed: 1641367881
193098 MB RAM detected; reserving 96549 MB for main workspace.
Scanning .ped file... done.
Performing single-pass .bed write (9000 variants, 5550 samples).
--file: snp_binary-temporary.bed + snp_binary-temporary.bim +
snp_binary-temporary.fam written.
9000 variants loaded from .bim file.
5550 samples (2550 males, 3000 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 550 founders and 5000 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
9000 variants and 5550 samples pass filters and QC.
Note: No phenotypes present.
--make-bed to snp_binary.bed + snp_binary.bim + snp_binary.fam ... done.

End time: Wed Jan  5 18:31:23 2022