snps_hwe_001.log

PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --bfile snps_maf_01
  --chr-set 30
  --hwe 0.001
  --make-bed
  --out snps_hwe_001

Hostname: gadi-cpu-clx-2571.gadi.nci.org.au
Working directory: /scratch/eu82/mn7316/Grid_search/Simulated_data/test_1
Start time: Wed Jan  5 18:31:23 2022

Random number seed: 1641367883
193098 MB RAM detected; reserving 96549 MB for main workspace.
7662 variants loaded from .bim file.
5550 samples (2550 males, 3000 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 550 founders and 5000 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
--hwe: 1 variant removed due to Hardy-Weinberg exact test.
7661 variants and 5550 samples pass filters and QC.
Note: No phenotypes present.
--make-bed to snps_hwe_001.bed + snps_hwe_001.bim + snps_hwe_001.fam ... done.

End time: Wed Jan  5 18:31:24 2022