snps_maf_01.log

PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --bfile snp_binary
  --chr-set 30
  --maf 0.01
  --make-bed
  --nonfounders
  --out snps_maf_01

Hostname: gadi-cpu-clx-2571.gadi.nci.org.au
Working directory: /scratch/eu82/mn7316/Grid_search/Simulated_data/test_1
Start time: Wed Jan  5 18:31:23 2022

Random number seed: 1641367883
193098 MB RAM detected; reserving 96549 MB for main workspace.
9000 variants loaded from .bim file.
5550 samples (2550 males, 3000 females) loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 550 founders and 5000 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is exactly 1.
1338 variants removed due to minor allele threshold(s)
(--maf/--max-maf/--mac/--max-mac).
7662 variants and 5550 samples pass filters and QC.
Note: No phenotypes present.
--make-bed to snps_maf_01.bed + snps_maf_01.bim + snps_maf_01.fam ... done.

End time: Wed Jan  5 18:31:23 2022