diff --git a/.github/workflows/push_conda.yml b/.github/workflows/push_conda.yml index e0a964e..8993ea7 100644 --- a/.github/workflows/push_conda.yml +++ b/.github/workflows/push_conda.yml @@ -31,7 +31,7 @@ jobs: auto-activate-base: true - name: Install dependencies run: | - mamba install -y -c conda-forge conda-build anaconda-client boa + mamba install -y -c conda-forge conda-build anaconda-client boa python=3.11 - name: Get latest commit SHA from main id: get_sha run: | diff --git a/Dockerfile b/Dockerfile index 88ab00e..c18a95c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -17,11 +17,11 @@ RUN set -e && \ mamba create -y -n snakebids-env -c conda-forge -c bioconda snakebids unzip && \ source /opt/conda/etc/profile.d/conda.sh && \ conda activate snakebids-env && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ ./autoafids/run.py test_data/bids_T2w test_out participant --modality T2w --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ ./autoafids/run.py test_data/bids_ct test_out participant --modality ct --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --stereotaxy STN --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ - ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 001 --fidqc --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --stereotaxy STN --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ + ./autoafids/run.py test_data/bids_T1w test_out participant --participant-label 002 --fidqc --use-conda --conda-create-envs-only --cores all --conda-prefix /src/conda-envs && \ conda clean --all -y && \ rm -rf /opt/conda/pkgs /root/.caches