diff --git a/autoafids/workflow/Snakefile b/autoafids/workflow/Snakefile index ffe2f0a..4eb5972 100644 --- a/autoafids/workflow/Snakefile +++ b/autoafids/workflow/Snakefile @@ -252,7 +252,7 @@ if "resample_im" in profile_settings: "scripts/resample_img.py" -rule mni2sub: +rule regmni2sub: input: im_resamp=bids( root=work, diff --git a/autoafids/workflow/rules/cnn.smk b/autoafids/workflow/rules/cnn.smk index 0f39f32..261f9f2 100644 --- a/autoafids/workflow/rules/cnn.smk +++ b/autoafids/workflow/rules/cnn.smk @@ -17,7 +17,7 @@ rule download_cnn_model: " rm model.zip" -rule gen_fcsv: +rule applyfidmodel: input: t1w=bids( root=work, diff --git a/autoafids/workflow/rules/stereotaxy.smk b/autoafids/workflow/rules/stereotaxy.smk index 6adf575..f439c97 100644 --- a/autoafids/workflow/rules/stereotaxy.smk +++ b/autoafids/workflow/rules/stereotaxy.smk @@ -1,7 +1,7 @@ stereotaxy_target = config["stereotaxy"] -rule afidspred: +rule stereotaxy: input: afidfcsv=bids( root=root,