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Muse Schema Test

python test_prep.py <tsv_file> <tsv_scheme_file> <template_file> <output_dir>

Only tsv_file is required. Script uses schemas in directory by default.

The process should be:

DONE

  • upload TSV, headers of TSV must match the tsv-schema.json,
  • values from rows get captured and used to fill in payload-template.json
  • payload file is generated IF all required fields are present.
  • hardcoded "files" array gets added payload file.

TODO

  • and the resulting JSON document must validate against cholgen_sequence.json