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Relation.Binary.Morphism.Definitions has as module parameters the domain and codomain of the functions over which the definitions are made, whereas Function.Definitions has them in a variable block. The former module only contains Homomorphic₂, which is exactly the same as the latter's Congruent, and a re-export of Morphism from Function.Core, which I think is otherwise unused in the library (and is just a synonym for the function arrow).
Can we deprecate Relation.Morphism.Definitions in favour of Function.Definitions?