Create convertOnsetTimes_ToneCountingFSL.sh

Author: andrewjahn

convertOnsetTimes_ToneCountingFSL.sh

@@ -0,0 +1,16 @@
+  #!/bin/bash
+
+  #Check whether the file subjList.txt exists; if not, create it
+  if [ ! -f subjList.txt ]; then
+          ls -d sub-?? > subjList.txt
+  fi
+
+  #Loop over all subjects and format timing files into FSL format
+  for subj in `cat subjList.txt` ; do
+          cd $subj/func #Navigate to the subject's func directory, which contains the timing files
+
+          cat ${subj}_task-tonecounting_events.tsv | awk '{if (NR!=1 && $5=="") {print $1, $2, "1"}}' > toneCount_run1.txt
+          cat ${subj}_task-tonecounting_events.tsv | awk '{if ($5=="probe") {print $1, $2, "1"}}' > toneProbe_run1.txt
+
+          cd ../..
+  done