Code For Fig.2 Frontiers 2019 Paper

[ALGW71]

Hi Mike,

It says in the methods for the paper that all code is available here - would you be able to direct me to the code for Fig. 2 please?

Struggling to rework the tutorial code in order to show individual clonotypes alongside the connected CDR3s on my data as you have done nicely in Fig 2. The pairing functions for Fig. 4 work well.

I don't need the ALICE overlay as done for Fig. 2C - just want to show a whole sample with the isolated CDR3 sequences and those that can be connected by a Hamming or Lv distance.

Kind Regards,
Alex

[mikessh]

Hello!
Fig 2 was produced by Mikhail Pogorelyy and he used graphviz for that. I do think this is a rather generic task, so either code for Fig 4 or graphviz will work for this purpose. Misha @pogorely please correct me if I'm wrong.