Make guppyplex ignore hidden files #303

	name: fieldbioinformatics_unit_tests

	on: [push, pull_request]

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	steps:
	- uses: actions/checkout@v3
	- uses: mamba-org/setup-micromamba@v1
	name: Setup dependencies
	with:
	environment-file: environment.yml
	init-shell: >-
	bash
	cache-environment: true
	post-cleanup: "all"

	- name: Pip install artic
	run: \|
	python3 -m pip install -e .
	shell: micromamba-shell {0}

	- name: get models
	run: \|
	artic_get_models --models r941_prom_hac_g360+g422
	shell: micromamba-shell {0}

	- name: Run unit tests
	run: \|
	pytest tests/*_unit_test.py
	shell: micromamba-shell {0}

	- name: Run clair3 test
	run: \|
	./test-runner.sh clair3
	shell: micromamba-shell {0}

	- name: Run minion_validator tests
	run: \|
	pytest -s tests/minion_validator.py
	shell: micromamba-shell {0}

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