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Overhead for CARCADE Merge into V3 #169

@allison-li-1016

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@allison-li-1016

Running list of topics to address at a later time
Absolute counts are slightly off

  • CD4 should grow to 30k, currently is closer to 20k
  • CD8 cells should grow to 20k, currently is at 5k

CARCADE is super slow to run:

  • Using Runge Kutta equation solver in inflammation modules
  • Storing prior IL2 time points in memory (boundArray)

Proxy K off for CAR binding dynamics:

  • Checking for time delay (one day) before unbinding in T cell agent rules

How to handle exclusive cell states for cell types:

  • Potentially throwing exceptions when user tries to set a cell state that is not represented in the cell type

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