I have a very large .silent file. Each pdb file is present twice (before and after MPNN sequence redesign). The tags for each pdb in the silent file are named like this:
with all tags ending with "_1" indicating the same structure after sequence redesign. However when I try to extract foo_1 using the below command I get the following output:
/path/to/silent_tools/silentextractspecific /path/to/silent_file.silent foo_1
extracting Pose with tag foo into PDB file foo.pdb
So silentextractspecific is extracting the original pdb (foo) and not the "foo_1" tag that I requested. Any idea why this would happen and if there's a fix?
I have a very large .silent file. Each pdb file is present twice (before and after MPNN sequence redesign). The tags for each pdb in the silent file are named like this:
with all tags ending with "_1" indicating the same structure after sequence redesign. However when I try to extract foo_1 using the below command I get the following output:
So silentextractspecific is extracting the original pdb (foo) and not the "foo_1" tag that I requested. Any idea why this would happen and if there's a fix?