Koverage/setup.py at main · beardymcjohnface/Koverage · GitHub

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from setuptools import setup


def get_version():
    with open("koverage/VERSION", "r") as f:
        return f.readline().strip()


def get_description():
    with open("README.md", "r") as f:
        long_description = f.read()
    return long_description


data_files = [(".", ["README.md"])]


CLASSIFIERS = [
    "Environment :: Console",
    "Environment :: MacOS X",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT license",
    "Natural Language :: English",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS :: MacOS X",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]


packages = ["koverage", "koverage.scripts"]


package_data = {
    "koverage": ["*.py"],
    "koverage.scripts": ["*.py"]
}


setup(
    name="koverage",
    packages=packages,
    url="https://github.com/beardymcjohnface/Koverage",
    python_requires=">=3.10",
    description="Quickly get coverage statistics given reads and an assembly",
    long_description=get_description(),
    long_description_content_type="text/markdown",
    version=get_version(),
    author="Michael Roach",
    author_email="beardymcjohnface@gmail.com",
    data_files=data_files,
    package_data=package_data,
    install_requires=[
        "snaketool-utils>=0.0.5",
        "metasnek>=0.0.8",
        "snakemake>=7.29,<8",
        "pulp<2.8",
        "pyyaml>=6.0",
        "Click>=8.1.3",
        "zstandard>=0.21.0",
        "numpy>=1.24.3",
        "datapane>=0.16.7",
        "plotly>=5.15.0",
    ],
    entry_points={
        "console_scripts": [
            "koverage=koverage.__main__:main"
        ]
    },
    include_package_data=True,
)