cpo_snpdist.xml

<tool id="cpo_snippy_dist" name="cpo_snippy_dist" version="0.6">
  <description>modified snippy-dist v0.6 to the tree drawer of the cpo_predictions workflow</description>
  <requirements>
        <requirement type="package" version="0.6">snp-dists</requirement>
    </requirements>
    <command detect_errors="exit_code">
      <![CDATA[ 
      snp-dists $input > distance.tab    
      ]]></command>

    <inputs>
        <param type="data" name="input" format="fasta" />
    </inputs>
    <outputs>
		<data name="distance.tab" format="tabular" from_work_dir="distance.tab"/>
    </outputs>
    <help>
		runs snippy-dist on the output from snippy-core
	</help>
	<citations>
	<citation type="bibtex">
@misc{cpo,
  author = {j, j},
  year = {2018},
  title = {cpo_prediction},
  publisher = {j},
  journal = {j of j},
  url = {https://bfjia.net,
}</citation>
    </citations>
</tool>