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<!DOCTYPE html>
<html>
<head>
<title>Reference SNP (refSNP) Cluster Report: rs9606708 </title>
<link rel="stylesheet" type="text/css" href="/core/extjs/ext-3.4.2/resources/css/ext-all.css" />
<link rel="stylesheet" type="text/css" href="/core/extjs/ext-3.4.2/resources/css/xtheme-gray.css" id="theme">
<link rel="stylesheet" type="text/css" href="/projects/sviewer/css/style.css" media="screen, projection, print"/>
<link rel="stylesheet" href="CSS/gv.css"/>
<script type='text/javascript' src='common.js'></script>
<script type='text/javascript' src='css.js'></script>
<meta http-equiv="X-UA-Compatible" content="IE=7" />
<meta name="ncbi_sessionid" content="07515F043B31CF4D_0001SID" />
<meta name="ncbi_phid" content="07515F043B31CF4D0000000000011CF4" />
<script type='text/javascript' src='/core/extjs/ext-3.4.2/adapter/ext/ext-base.js'></script>
<script type='text/javascript' src='/core/extjs/ext-3.4.2/ext-all.js'></script>
<script type="text/javascript" src="/projects/sviewer/js/sviewer.js"></script>
<script type="text/javascript" src="/core/jig/1.13/js/jig.min.js"></script>
<script src="Javascripts/jquery.xml2json.js" type="text/javascript"></script>
<script src="Javascripts/gv.js" type="text/javascript"></script>
<script type="text/javascript">
function getURLParameter(name) {
return decodeURIComponent((new RegExp('[?|&]' + name + '=' + '([^&;]+?)(&|#|;|$)').exec(location.search)||[,""])[1].replace(/\+/g, '%20'))||null;
}
// progagate connect param to snp_gene.cgi
var connectStr = getURLParameter('connect');
if (connectStr === null) {
connectStr = '';
}
$J(function(){$J.ajax ({ url:"/projects/SNP/snp_gene.cgi", dataType: 'text', data: {"rs":9606708, "connect":connectStr}, success:function( data, status) {fnProcessResponse (data, status)}, error:function( obj, status, e ){ alert ("error: " + status) }, complete:function(obj, status){ } });});
</script>
<SCRIPT language="javascript" type="text/javascript">
function openPopup(legendURL){
legend=window.open(legendURL,"_blank",
"height=300,width=350,left=300,top=300,scrollbars=1,resizable=1");
}
</SCRIPT>
<!-- #BeginEditable "doctitle" -->
<!-- #EndEditable -->
<meta http-equiv="Content-Type"
content="text/html; charset=iso-8859-1">
<META name="keywords" content="single nucleotide polymorphism, SNP,
sequence variation, genome, gene mapping, population structure, dbSNP,
evolution, microsatellite repeat, phenotype, national center for
biotechnology information, ncbi, national library of medicine, nlm, database,
archive, bioinformatics, national institute of health, ncbi">
<META name="description" content="The Single Nucleotide Polymorphism
database (dbSNP) is a public-domain archive for a broad collection of simple
genetic polymorphisms.">
<META name="author" content="snpdev">
<META name="robots" content="index,nofollow,noarchive">
<meta http-equiv="Expires" content="Wed, 28 Jan 2006 01:01:01 GMT">
<meta name="ncbi_app" content="refSNP" />
<meta name="ncbi_db" content="dbSNP" />
<meta name="ncbi_pcid" content="detailed SNP report" />
<!-- #BeginEditable "MetaRegion" -->
<META name="robots" content="index,nofollow,ARCHIVE">
<META NAME="keywords" CONTENT="SNP, Polymorphism, deletion, insertion, microsatellite, Indel, Haplotype, genotype, population, frequency">
<META NAME="description" CONTENT="Database of Single Nucleotide Polymorphism">
<!-- #EndEditable -->
<script language="JavaScript" src="http://www.ncbi.nlm.nih.gov:80/corehtml/query/query.js"></script>
<script language="JavaScript" src="Javascripts/snputils.js"></script>
<script src="Javascripts/prototype.js" type="text/javascript"></script>
<script language="JavaScript" src="Javascripts/cookies.js"></script>
<script language="JavaScript" src="Javascripts/sidebar.js"></script>
<link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi.css">
<link rel="stylesheet" href="snp.css" type="text/css">
<link type="text/css" rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi_test.css">
<link rel="stylesheet" href="CSS/gv.css"/>
<!-- #BeginEditable "JAVASCRIPT" -->
<script language="JavaScript" src="snpEntrez.js"></script>
<SCRIPT language="JavaScript">
//JAVASCRIPTS start here
function TaxID()
{
taxnum = document.freeform.TAXID.options[document.freeform.TAXID.selectedIndex].value;
querystr = document.freeform.querytext.value;
querystr = querystr + "[TAX_ID]=" + taxnum;
document.freeform.querytext.value = querystr;
}
function getSubID()
{
selection = document.searchID.Type;
gettype = selection.options[selection.selectedIndex].value;
b = document.searchID.sub_id.value;
if (gettype == "dbSNP_rs")
{
var numstr = /rs\d+$/;
if (!(b.match(numstr)) ) {
alert (b + " is incorrect format!\nThe ID should have the prefix \"rs\" and a number \n (eg. rs23131)");
return false;}
}
if (gettype == "dbSNP_ss")
{
var numstr = /ss\d+$/;
if (!(b.match(numstr)) ) {
alert (b + " is incorrect format!\nThe ID should have the prefix \"ss\" and a number \n (eg. ss23131)");
return false;}
}
}
function getSTSname()
{
if ((document.STSSearch.STSname1.value == "") || (document.STSSearch.STSname2.value == ""))
{
alert("Please enter two STS markers!")
document.STSSearch.STSname1.focus();
return false;
}
else
{
return true;
}
}
</SCRIPT>
<style type="text/css">
<!--
.style1 {color: #0000FF}
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</style>
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</head>
<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600" onLoad="">
<!-- #BeginEditable "DHTML Items" --><!-- #EndEditable -->
<!-- the header -->
<!--start of first table --><!-- #BeginLibraryItem "/Library/dbSNP_topbar.lbi" -->
<style type="text/css">
<!--
.style1 {color: #FF0000}
.style2 {
font-size: 18px;
font-weight: bold;
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</style>
<img src="#maincontent" width="100%" height="1" alt="Skip to main content">
<table width="615" border="0" cellpadding="0" cellspacing="0">
<tr>
<!-- logo -->
<td><table width="100%" border="0" cellpadding="0" cellspacing="0">
<tr>
<td width="135" align="left" bgcolor="#336699"><a href="http://www.ncbi.nlm.nih.gov"><img src="corehtml/left.GIF" width="130" height="45" border="0" alt="NCBI"></a><br>
</td>
<td align="left"><!-- #BeginLibraryItem "/Library/SNPlogo.lbi" --><img name="SNPlogo" src="Images/SNPlogo2_ver2.jpg" width="440" height="70" border="0" alt="dbSNP"><!-- #EndLibraryItem --><!-- #BeginLibraryItem "/Library/Alert.lbi" --><!-- #EndLibraryItem --></p></td>
</tr>
</table></td>
</tr>
<tr>
<!--site map-->
<td><table class="TEXT" border="0" cellspacing="0" cellpadding="2" bgcolor="#000000" width="100%">
<tr class="TEXT" align="CENTER">
<td><a href="/entrez/query.fcgi?db=PubMed" class="topbarHeading"><font color="#FFFFFF">PubMed</font></a></td>
<td><a href="/entrez/query.fcgi?db=Nucleotide" class="topbarHeading"><font color="#FFFFFF">Nucleotide</font></a></td>
<td><a href="/entrez/query.fcgi?db=Protein" class="topbarHeading"><font color="#FFFFFF">Protein</font></a></td>
<td><a href="/entrez/query.fcgi?db=Genome" class="topbarHeading"><font color="#FFFFFF">Genome</font></a></td>
<td><a href="/entrez/query.fcgi?db=Structure" class="topbarHeading"><font color="#FFFFFF">Structure</font></a></td>
<td><a href="/entrez/query.fcgi?db=Popset" class="topbarHeading"><font color="#FFFFFF">PopSet</font></a></td>
<td><a href="/entrez/query.fcgi?db=Taxonomy" class="topbarHeading"><font color="#FFFFFF">Taxonomy</font></a></td>
<td><a href="/entrez/query.fcgi?db=OMIM" class="topbarHeading"><font color="#FFFFFF">OMIM</font></a></td>
<td><a href="/entrez/query.fcgi?db=Books" class="topbarHeading"><font color="#FFFFFF">Books</font></a></td>
<td><a href="/entrez/query.fcgi?db=Snp" class="topbarHeading"><font color="#FFFFFF">SNP</font></a></td>
</tr>
</table></td>
</tr>
<tr>
<!--query box-->
<td><table border="0" width="100%" cellspacing="0" cellpadding="2" bgcolor="#ccccff">
<form action="http://www.ncbi.nlm.nih.gov/coreutils/dispatch.cgi" method="post" name="Search" id="Search">
<tbody>
<tr>
<td class="SMALL1"><div id="HintEntrezSnp" class="hintBox">Search for SNP on NCBI Reference Assembly</div><label for="Search"> Search Entrez</label>
<small>
<select name="db">
<option value="500">All Databases</option>
<option value="17">NCBI Web Site</option>
<option value="00">-------------</option>
<option value="0">PubMed</option>
<option value="1">Protein</option>
<option value="2">Nucleotide</option>
<option value="37">EST</option>
<option value="38">GSS</option>
<option value="3">Structure</option>
<option value="4">Genome</option>
<option value="8">Books</option>
<option value="23">CancerChromosomes</option>
<option value="14">Conserved Domains</option>
<option value="10">3D Domains</option>
<option value="21">Gene</option>
<option value="30">Genome Project</option>
<option value="34">dbGaP</option>
<option value="28">GENSAT</option>
<option value="19">GEO Profiles</option>
<option value="20">GEO Datasets</option>
<option value="22">HomoloGene</option>
<option value="15">Journals</option>
<option value="18">MeSH</option>
<option value="24">NLM Catalog</option>
<option value="33">OMIA</option>
<option value="6">OMIM</option>
<option value="16">PMC</option>
<option value="5">PopSet</option>
<option value="29">Probe</option>
<option value="35">Protein Clusters</option>
<option value="25">PubChem BioAssay</option>
<option value="26">PubChem Compound</option>
<option value="27">PubChem Substance</option>
<option value="13" selected>SNP</option>
<option value="7">Taxonomy</option>
<option value="11">UniGene</option>
<option value="12">UniSTS</option>
</select>
</small>
<label for="term">for</label>
<input type="text" name="term" id="term" alt="search term" size="24">
<input type="submit" name="submit" value="Go">
<input type="hidden" name="SITE" value="NcbiHome"></td>
</tr>
</tbody>
</form>
</table></td>
</tr>
<tr>
<td><table width="615" border="0" cellpadding="0" cellspacing="0">
<tr>
<td width="153" bgcolor="#CCCCCC"><img src="corehtml/transparent.gif" width="130" height="1" alt="transparent GIF"></td>
<td width="462" bgcolor="#CCCCCC"><!-- toolbar -->
</td>
</tr>
</table></td>
</tr>
</table>
<!-- #EndLibraryItem --><!--end of first table -->
<!-- the contents -->
<table summary="" border="0" width="615" cellspacing="0" cellpadding="0">
<tr valign="TOP">
<!-- left column -->
<td
width="135" valign="top" bgcolor="#336699"> <span class="GUTTER1"></span> <img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF"
width="135" height="1" border="0" alt="Spacer gif"><!-- #BeginLibraryItem "/Library/dbSNP_sidebar.lbi" -->
<link href="CSS/snp.css" rel="stylesheet" type="text/css">
<style type="text/css">
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background-color: #f90;
color: #fff;
width: 120px;
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<table width="100%">
<tr>
<td>
<div align="center"></div>
<div align="center"><!-- #BeginLibraryItem "/Library/FAQ search box.lbi" -->
<div class="roundcont">
<div class="faqtitle">Have a question about dbSNP? Try searching the SNP FAQ Archive!</div>
<form name="frmGo" method="get" action="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi" onSubmit="searchFAQ(this);">
<input name="db" value="Books" type="hidden">
<input name="cmd" value="Search" type="hidden">
<input name="term" value="" alt="FAQ search Term" size="12">
<input type="submit" name="Submit" value="Go">
<input name="doptcmdl" value="TOCView" type="hidden">
</form>
<script language="JavaScript" type="text/JavaScript">
<!--
function searchFAQ (frm) {
frm.term.value += ' AND helpsnpfaq[book]';
}
-->
</script>
</div> <!-- #EndLibraryItem --></div><div class="sidebarDiv" id="sideBar">
<p>
<div class="sidebarHeading" id="divGeneral" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">GENERAL</div>
<div class="sidebarSubHeadingDiv" id="divGeneralContent">
<a accesskey="R" href="http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews">RSS Feed</a><a href="http://www.ncbi.nlm.nih.gov/feed/rss.cgi?ChanKey=dbsnpnews"><img src="Images/rss.gif" alt="RSS" border="0"></a><br>
<a accesskey="A" href="javascript:Help();" >Contact Us</a><br>
<a accesskey="C" href="index.html">dbSNP Homepage</a><br>
<a accesskey="D" href="http://www.ncbi.nlm.nih.gov/mailman/listinfo/dbsnp-announce">Announcements</a><BR>
<a accesskey="E" href="snp_summary.cgi">dbSNP Summary</a><BR>
<a accesskey="F" href="ftp://ftp.ncbi.nih.gov/snp/">FTP Download</a>
</div>
<div class="sidebarHeading" id="divHumanVariations" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">HUMAN VARIATION</div>
<div class="sidebarSubHeadingDiv" id="divHumanVariationsContent">
<a accesskey="G" href="tranSNP/tranSNP.cgi" title="Search for variation in the human genome using HGVS nomenclature with an opportunity to submit new or annotate existing information ">Search, Annotate, Submit</a><span class="sidebarHeading"></span><br>
<a accesskey="H" href="tranSNP/VarBatchSub.cgi" title="Submit multiple variants using HGVS nomenclature with an opportunity to identify their clinical relevance">Annotate and Submit Batch Data with Clinical Impact</a><span class="sidebarHeading"></span><br>
<a accesskey="R" href="docs/rs_attributes.html" title="New RS Attributes for filtering variations">Attributes for Filtering Variation</a><span class="sidebarHeading"></span><br>
</div>
<div class="sidebarHeading" id="divSubmission" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">SNP SUBMISSION</div>
<div class="sidebarSubHeadingDiv" id="divSubmissionContent">
<!-- <a accesskey="I" href="/books/NBK21088/">Quick Start</a><br> -->
<a accesskey="J" href="how_to_submit.html">How to Submit</a><br>
<a accesskey="V" href="docs/dbSNP_VCF_Submission.pdf">VCF Submission</a><img src="new.gif" width="25" height="12" alt="NEW gif"><br>
<a accesskey="K" href="handle.html">Handle Request</a><br>
</div>
<div class="sidebarHeading" id="divDocumentation" onClick="toggleSideBar(this);" onKeyPress="toggleSideBar(this);">DOCUMENTATION</div>
<div class="sidebarSubHeadingDiv" id="divDocumentationContent">
<a accesskey="S" href="ftp://ftp.ncbi.nih.gov/pub/factsheets/Factsheet_SNP.pdf">dbSNP Fact Sheet</a><img src="new.gif" width="25" height="12" alt="NEW gif"><BR>
<a accesskey="L" href="/mailman/mmsearch/dbsnp-announce?restrict=;exclude=;config=dbsnp-announce;method=or;format=short;sort=time;words=build;page=1">Build Release Note</a><br>
<a accesskey="M" href="buildhistory.cgi">Build History</a><br>
<a accesskey="N" href="/books/NBK3848/" title="Search SNP archived FAQ updated to 2006">Search FAQ Archive</a><br>
<a accesskey="O" href="/books/NBK174586/">dbSNP Handbook</a><br>
<a accesskey="P" href="get_html.cgi?whichHtml=overview">Overview</a><br>
<a accesskey="S" href="ftp://ftp.ncbi.nih.gov/snp/database/b124/mssql/schema/erd_dbSNP.pdf">Database Schema</a><br>
<a accesskey="T" href="snp_db_list_table.cgi">Database Dictionary</a><br>
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<td style="text-align:left;background-color:#CCCCFF;weight:bold"><b>Reference SNP (refSNP) Cluster Report: rs9606708 </b><span style="color:red"><b></b></span></td>
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<TABLE>
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<TABLE border="0"><TR valign="top"><td ><TABLE id="RefSNP" cellpadding="2" width="350" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="2">RefSNP</TH><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Organism:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">human (<a href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=9606"><em>Homo sapiens</em></a>)</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Molecule Type:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">Genomic</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Created/Updated in build:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">119/141</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Map to Genome Build:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><a href="http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=9606">106</a>/<a title="dbSNP Mapping Weight (1=unique position)" href="http://www.ncbi.nlm.nih.gov/books/NBK44455/#Build.Mapping_Weight">Weight </a></td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="/projects/SNP/snp_legend.cgi?legend=validation">Validation Status:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><IMG border="0" height="17" src="gif/val_cluster.gif" alt="byCluster" width="15"><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"><IMG border="0" height="17" src="gif/val_2hit.gif" alt="with2hit" width="15"><IMG border="0" height="17" src="gif/val_hapmap.gif" alt="withHapMapFreq" width="15"><IMG border="0" height="17" src="gif/val_1000G.gif" alt="With1000GenomeData" width="15"></td></TR></TABLE></td><td ><TABLE id="Allele" cellpadding="2" width="350" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="2">Allele</TH><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="javascript:openPopup("snp_legend.cgi?legend=snpClass");">Variation Class:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">SNV:<BR> single nucleotide variation</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>RefSNP Alleles:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">G/T (<span title="rs9606708 alleles are reported in forward orientation to genome">FWD</span>)</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Allele Origin:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"> </td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Ancestral Allele:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">G</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Clinical Channel:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">unknown</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>Clinical Significance:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">NA</td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong><a href="http://www.ncbi.nlm.nih.gov/projects/SNP/docs/rs_attributes.html#gmaf">MAF/MinorAlleleCount:</a></strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1"><span title="reported on genome orientation">T=0.292/637</span></td></TR><TR ><td class="text10" bgcolor="#f1f1f1" align="right"><strong>MAF Source:</strong></td><td class="text10" style="text-align:left;background-color:#f1f1f1">1000 Genomes</td></TR></TABLE></td><td ><TABLE id="HGVS Names" cellpadding="2" width="200" ><TH class="text10" bgcolor="#ccccff" align="center" colspan="1">HGVS Names</TH><TR ><td><div class="jig-ncbiexpander" style="width:300px;height:200px;" data-jigconfig="auto:false,minHeight:'160px'"><ul class="dd_list"><li style="background-color:#f1f1f1">NC_000022.11:g.30250137G>T</li><li style="background-color:#f1f1f1">NG_008721.1:g.1671C>A</li><li style="background-color:#f1f1f1">NT_011520.13:g.11540573G>T</li><li style="background-color:#f1f1f1">XM_006724240.1:c.-102-3340C>A</li></ul></div></td></TR></TABLE></td><td ><TABLE ><TR ><td ><SPAN><script language="JavaScript1.2">
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</td><td ><a class="dblinks" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=gene_full_report&cmd=Retrieve&db=snp&list_uids=9606708&dopt=ExternalLink">, Linkout</a> </td></TR></TABLE></td></TR></TABLE><div style="text-align:left">SNP Details are organized in the following sections:</div>
<TABLE cellspacing ="1" >
<TR bgcolor="#CCCCFF" align="center">
<td style="color:white" width="80"><a href="#locus">GeneView</a></td>
<td style="color:white" width="80"><a href="#map">Map</a></td>
<td style="color:white" width="80" ><a href="#submission" name="maintab">Submission</a></td>
<td style="color:white" width="80"><a href="#fasta">Fasta</a></td>
<td style="color:white" width="80"><a href="#resource">Resource</a></td>
<td style="color:white" width="80"><a href="#Diversity">Diversity</a></td>
<td style="color:white" width="80"><a href="#validation">Validation</a></td>
</TR></TABLE>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="map"><strong>Integrated Maps (Hint: click on 'Chr Pos' or 'Contig Pos' column value to see variation in NCBI sequence viewer)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE> <div id="imaps-idle" class="ajax-idle"></div>
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<div class="ui-ncbigrid-inner-div">
<!--table class="annot-table" style="font-size: 11px; margin-left: 0px; margin-right:0px"-->
<table style="text-align: center; margin-left: 0px; margin-right:0px" data-jigconfig="isSortable: true, columnTypes: ['num', 'str', 'num', 'str', 'num', 'none', 'none', 'none', 'fnc:assemblySort', 'none', 'none']">
<!--caption style="text-align: center">Integrated Maps</caption-->
<thead>
<tr class="wrap-header">
<th title="Assembly" style="width:15px">Assembly</th>
<th title="Genome Build ID" style="width:70px">Genome<br>Build</th>
<th title="Chromosome ID" style="width:50px">Chr</th>
<th title="Chromosome Position" style="width:100px">Chr Pos</th>
<th title="Contig Accession" style="width:60">Contig</th>
<th title="Contig Position" style="width:70">Contig Pos</th>
<th title="SNP to Contig Orientation" style="width:10px">SNP to<br/>Chr</th>
<th title="Contig Allele" style="width:10px">Contig<br/>allele</th>
<th title="Contig to Chromosome Orientation" style="width:10px">Contig to<br/>Chr</th>
<!--th title="Assembly Type" style="width:70px">Group<br>term</th>
<th title="Group Label" style="width:10px">Group<br>label</th>
<th title="Contig Label" style="width:10px">Contig<br>label</th-->
<th title="Neighbor SNP" style="width:10px">Neighbor<br/>SNP</th>
<th title="SNP Map Method" style="width:10px">Map Method</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
<div id="imaps-sv"></div>
</div>
<div id="imaps-no-result" class="indent" style="display: none">
<span tmpl="rs"></span> doesn't map to any assembly.
</div>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="locus"><strong>GeneView </strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE> <div id="gv-idle" class="ajax-idle"></div>
<div id="gv-result" style="display: none">
<div id="ext-rsg" class="indent" style="display: none">
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-ng" class="annot-table"-->
<table id="ext-table-rsg">
<caption>RefSeqGene Mapping</caption>
<thead>
<tr>
<th>RefSeqGene</th>
<th>Gene (ID)</th>
<th>SNP to RefSeqGene</th>
<th>Position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
<div id="gv-gene-container" style="display: none">
<!-- Repeat the folowing section for each gene -->
<!--BEGIN gene section -->
<div id="gv-gene" >
<!--h4><span tmpl="rs"></span> is annotated on the gene <span tmpl="gene"></span></h4-->
<h4 style="text-align:left">GeneView via analysis of contig annotation: <span tmpl="gene"></span> <span class="note" tmpl="geneDescription"></span></h4>
<!-- gene model form. hide by default -->
<div style="text-align:left" id="gv-opt" class="expand indent">View more variation on this gene (click to hide).</div>
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<!--b>View variations for gene:</b-->
<form method="get" action="/projects/SNP/snp_ref.cgi" enctype="application/x-www-form-urlencoded">
<input name="showRare" title="Clinically associate snp is one with OMIM ID, or from LSDB or Clinical Diagnostic Assay." type="checkbox" checked="yes" id="show_rare_chk_box">
<label for="show_rare_chk_box"><span name="clin-checkbox-text">Clinical Source:</span></label>
<input type="radio" name="chooseRs" value="all" id="chooseRs_all" />
<label for="chooseRs_all">in gene region</label>
<input type="radio" name="chooseRs" value="coding" checked="checked" id="chooseRs_coding">
<label for="chooseRs_coding">cSNP</label>
<input type="radio" name="chooseRs" value="het" id="chooseRs_het" />
<label for="chooseRs_het">has frequency</label>
<input type="radio" name="chooseRs" value="doublehit" id="chooseRs_doublehit" />
<label for="chooseRs_doublehit">double hit</label>
<input name="go" value="Go" type="submit">
<input name="locusId" value="" type="hidden">
</form>
</div>
<div class="indent">
<!--h4>Functional annotation</h4-->
<div id="gv-detail" style="margin-top: 1em; margin-bottom: 1em">
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-g" class="annot-table" style="font-size: 12px"-->
<table id="gv-table-g">
<caption>Primary Assembly Mapping</caption>
<thead>
<tr>
<th>Assembly</th>
<th>SNP to Chr</th>
<th>Chr</th>
<th>Chr position</th>
<th>Contig</th>
<th>Contig position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
<p/>
<!-- place holder for NG table -->
<div class="jig-ncbigrid" style="margin-top: 1em; margin-bottom: 1em; width: 1000px;">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table-ng" class="annot-table"-->
<table id="gv-table-rsg">
<caption>RefSeqGene Mapping</caption>
<thead>
<tr>
<th>RefSeqGene</th>
<th>Gene (ID)</th>
<th>SNP to RefSeqGene</th>
<th>Position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
<p/>
<div class="jig-ncbigrid" style="width: 1000px">
<div class="ui-ncbigrid-inner-div">
<!--table id="gv-table" class="annot-table func-table" style="font-size: 12px"-->
<table id="gv-table">
<caption>Gene Model(s)<caption>
<thead>
<tr>
<th rowSpan="2" class="func">Function</th>
<th colSpan="4" class="mrnaT">mRNA</th>
<th colSpan="3" class="proteinT">Protein</th>
</tr>
<tr>
<th title="mRNA to contig orientation" class="mrna">SNP to mRNA</th>
<th class="mrna">Accession</th>
<th class="mrna">Position</th>
<th nowrap="nowrap" class="mrna">Allele change</th>
<th class="protein">Accession</th>
<th class="protein">Position</th>
<th nowrap="nowrap" class="protein">Residue change</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
</div>
<div style="font-weight:bold;margin-top:1em; display: none"><span tmpl="gene"></span> on <span tmpl="assembly"></span> assembly: <span tmpl="rs"></span> is labeled at position <span tmpl="chrPosFrom"></span> on chromosome <span tmpl="chr"></span>.</div>
<div id="gv-geneview-image" class="indent"></div>
</div>
<!--END gene section -->
</div> <!-- gv-gene-container -->
</div>
<!--div id="gv-no-result" class="indent"><h4><span tmpl="rs"></span> is not annotated on any gene</h4></div-->
<div id="gv-no-result" class="indent NA" style="display: none"><h4>GeneView via analysis of contig annotation: N/A.</div>
<div id="blast-result" style="display: none">
<div id="blast-gene-container">
<!-- Repeat the folowing section for each mRNA hit -->
<!--BEGIN blast section -->
<div id="blast-gene" class="indent">
<h4>GeneView via direct blast against RefSeq sequences (used when no gene model is available): <span tmpl="gene"></span> <span class="note" tmpl="geneDescription"></span></h4>
<!--div class="note">(Direct blast is used when the SNP doesn't align with mRNA and/or the mRNA doesn't align with contig.)</div-->
<div id="blast-detail">
<!--table id="blast-table-g" class="annot-table">
<thead>
<tr>
<th>Assembly</th>
<th>Chromosome</th>
<th>Chromosome position</th>
<th>Contig</th>
<th>Contig position</th>
<th>Allele</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table-->
<div class="jig-ncbigrid" config="width: 800">
<div class="ui-ncbigrid-inner-div">
<table id="blast-table" style="font-size: 12px">
<thead>
<tr>
<th rowSpan="2" class="func">Function</th>
<!--th rowSpan="2" class="func">Chr</th-->
<th colSpan="4" class="mrnaT">mRNA</th>
<th colSpan="3" class="proteinT">Protein</th>
</tr>
<tr>
<th title="SNP to mRNA orientation" class="mrna">SNP to mRNA</th>
<th class="mrna">Accession</th>
<th class="mrna">Position</th>
<th nowrap="nowrap" class="mrna">Allele change</th>
<th class="protein">Accession</th>
<th class="protein">Position</th>
<th nowrap="nowrap" class="protein">Residue change</th>
</tr>
</thead>
<tfoot>
</tfoot>
<tbody>
</tbody>
</table>
</div>
</div>
</div>
<div style="font-weight:bold;margin-top:1em; display: none"><span tmpl="gene"></span> on <span tmpl="assembly"></span> assembly: <span tmpl="rs"></span> is labeled at position <span tmpl="chrPosFrom"></span> on chromosome <span tmpl="chr"></span>.</div>
<div id="blast-geneview-image"></div>
</div>
<!--END blast section -->
</div>
</div>
<!--div id="blast-no-result" class="indent"><span tmpl="rs"></span> no link established by BLAST analysis on RefSeq mRNA sequences.</div-->
<div style="text-align:left" id="blast-no-result" class="indent NA" style="display: none"><h4>GeneView via direct blast against RefSeq sequences (used when no gene model is available): N/A</h4>
<!--div class="note">(Direct blast is used when the SNP doesn't align with mRNA and/or the mRNA doesn't align with contig.)</div-->
</div>
<BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="submission"><strong>Submitter records for this RefSNP Cluster</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><div style="text-align:left">The submission <strong>ss283619008</strong> has the longest flanking sequence of all cluster members and was used to instantiate sequence for <strong>rs9606708</strong> during BLAST analysis for the current build.</div><BR><BR><TABLE id="Submission"><TR ><TH bgcolor="silver">NCBI<br>Assay ID</TH><TH bgcolor="silver">Handle|Submitter ID</TH><TH bgcolor="silver"><a href="javascript:openPopup("snp_legend.cgi?legend=validation")">Validation<br>Status</a></TH><TH bgcolor="silver"><a href="ftp://ftp.ncbi.nih.gov/snp/database/Illumina_top_bot_strand.note.txt">ss to rs<BR>Orientation<BR>/Strand</a></TH><TH bgcolor="silver">Alleles</TH><TH bgcolor="silver">5' Near Seq 30 bp</TH><TH bgcolor="silver">3' Near Seq 30 bp</TH><TH bgcolor="silver">Entry<BR>Date</TH><TH bgcolor="silver">Update<BR>Date</TH><TH bgcolor="silver">Build<BR>Added</TH><TH bgcolor="silver">Molecule<BR>Type</TH><TH bgcolor="silver">Freq<BR>Warning</TH><TH bgcolor="silver">Ancestral<BR>Allele</TH><TH bgcolor="silver">Success<BR>Rate</TH></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=13348127">ss13348127</a></td><td >SC_SNP|NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/22/03</td><td >10/31/03</td><td >119</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=16928500">ss16928500</a></td><td >CSHL-HAPMAP|CSHL-HuAA-200402.chr22.NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >02/17/04</td><td >03/04/04</td><td >120</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=21854556">ss21854556</a></td><td >SSAHASNP|WGSA-200403-chr22.chr22.NT_011520.9_10036695</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/20/04</td><td >03/20/04</td><td >121</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=41545403">ss41545403</a></td><td >ABI|hCV2624328</td><td ><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >07/17/05</td><td >11/03/06</td><td >126</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=66568309">ss66568309</a></td><td >ILLUMINA|HumanHap300v1.1_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/09/06</td><td >11/09/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=67935959">ss67935959</a></td><td >ILLUMINA|HumanHap550v1.1_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/14/06</td><td >11/15/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=68053991">ss68053991</a></td><td >ILLUMINA|HumanHap650Yv1.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >11/14/06</td><td >11/15/06</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=69274569">ss69274569</a></td><td >PERLEGEN|PGP06257470</td><td ><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/07</td><td >03/31/08</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=71618716">ss71618716</a></td><td >ILLUMINA|HumanHap650Yv3.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/23/07</td><td >04/23/07</td><td >127</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=75547400">ss75547400</a></td><td >ILLUMINA|ILMN_Human_1M_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >08/28/07</td><td >08/29/07</td><td >129</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=79301290">ss79301290</a></td><td >ILLUMINA|HumanHap300v2.0_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/18/07</td><td >11/18/07</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=84843335">ss84843335</a></td><td >KRIBB_YJKIM|KHS826968</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/04/07</td><td >12/08/07</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=91903157">ss91903157</a></td><td >BCMHGSC_JDW|JWB-1520110</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >02/26/08</td><td >03/02/08</td><td >129</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=96097413">ss96097413</a></td><td ><a href="http://huref.jcvi.org/browse.html?search=1103691027931">HUMANGENOME_JCVI|1103691027931</a></td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/25/08</td><td >03/25/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=98277626">ss98277626</a></td><td >ILLUMINA|HumanHap550v3.0__rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/20/07</td><td >03/31/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=106223689">ss106223689</a></td><td >BGI|BGI_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >09/13/08</td><td >06/18/09</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=112606151">ss112606151</a></td><td >1000GENOMES|CEU.trio.12.15.2008_3798970_chr22_28976126</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/17/08</td><td >12/17/08</td><td >130</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=123021296">ss123021296</a></td><td >ILLUMINA|HumanCNV370v1_C_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >04/14/09</td><td >04/15/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=138346539">ss138346539</a></td><td >ENSEMBL|ENSSNP11918354</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/15/09</td><td >05/17/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=143491661">ss143491661</a></td><td >ENSEMBL|ENSSNP8495803</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/08/08</td><td >10/19/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=154503753">ss154503753</a></td><td >ILLUMINA|Human610_Quadv1_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/18/09</td><td >06/20/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=157122119">ss157122119</a></td><td >GMI|GMI_SNP_24526442</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/24/09</td><td >06/25/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=159677621">ss159677621</a></td><td >ILLUMINA|Human660W-Quad_v1_A_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >07/06/09</td><td >07/07/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=161003304">ss161003304</a></td><td >ILLUMINA|HumanOmni1-Quad_v1-0_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >08/04/09</td><td >10/05/09</td><td >131</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=172486366">ss172486366</a></td><td >ILLUMINA|HumanCNV370-Quadv3_C_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/01/09</td><td >10/04/09</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=174876723">ss174876723</a></td><td >ILLUMINA|Human1M-Duov3_B_rs9606708-128_B_F_1501894466</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >10/01/09</td><td >10/05/09</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=208844766">ss208844766</a></td><td >BCM-HGSC-SUB|BCM_CMT_1011-3300201</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >03/15/10</td><td >03/20/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=238051055">ss238051055</a></td><td >1000GENOMES|pilot_1_CEU_7655684_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/01/10</td><td >05/01/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=244174526">ss244174526</a></td><td >1000GENOMES|pilot_1_CHB+JPT_6059603_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >05/01/10</td><td >05/01/10</td><td >132</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><strong><a href="snp_ss.cgi?subsnp_id=283619008">ss283619008</a></strong></td><td >GMI|GMI_AK_SNP_7939429</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >12/16/10</td><td >12/16/10</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=292751589">ss292751589</a></td><td >PJP|SNP_2257947_chr22_28976126</td><td ></td><td >fwd/</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/21/11</td><td >01/21/11</td><td >134</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=410959265">ss410959265</a></td><td >ILLUMINA|Cardio-Metabo_Chip_11395247_A_rs9606708</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/07/11</td><td >06/08/11</td><td >135</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=481949360">ss481949360</a></td><td >ILLUMINA|HumanOmni2.5-4v1_B_rs9606708-128_B_F_1617221482</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/01/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=481982920">ss481982920</a></td><td >ILLUMINA|HumanOmniExpress-12v1_C_rs9606708-131_B_F_1857685230</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/01/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=482938092">ss482938092</a></td><td >ILLUMINA|HumanOmni1-Quad_v1-0_C_rs9606708-131_B_F_1865217451</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/02/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=485768355">ss485768355</a></td><td >ILLUMINA|HumanOmni2.5-4v1_D_rs9606708-131_B_F_1857685230</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >01/30/12</td><td >02/05/12</td><td >137</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=537617001">ss537617001</a></td><td >ILLUMINA|HumanOmni5-4v1_B__rs9606708-131_B_F_1885686767</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">aatggactctggcctcattcacaaccaggt</span></td><td >06/22/12</td><td >07/04/12</td><td >138</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR><TR style="text-align:left"><td ><a href="snp_ss.cgi?subsnp_id=662540137">ss662540137</a></td><td >SSMP|22_30646126</td><td ></td><td >fwd/B</td><td >G/T</td><td ><span face="courier" size="-2">aaaggagatggagaggcctgaaggtttgaa</span></td><td ><span face="courier" size="-2">atggactctggcctcattcacaaccaggtt</span></td><td >12/14/12</td><td >12/17/12</td><td >138</td><td >Genomic</td><td ></td><td ></td><td >unknown</td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="fasta"><strong>Fasta sequence (<a href="javascript:openPopup("snp_legend.cgi?legend=fasta");">Legend</a>)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><DIV id="Fasta" style="font-family:courier;text-align:left;"><div style="text-align:left">>gnl|dbSNP|rs9606708|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=138<PRE> CCCCATCCAC AAGTCTCTCC TGGGATATCA CAGCTGCTTA TTTTCCAGAT GGGGAAATTG
AGGCTCAGAG AGGTGAAGAT AACTATGTGG GGCTCACATA AAGAGTTAAT AACAGAGCCA
GGTCTGGAAC CGGGGCTTCT GTCTTGCAGG CCACAACAAT CCCTGCAGCA CCTCTTGCTC
TGAGAGGGCG AAGGGCATGG CAGGAGTGCT CGGGTCGCCT TCCTCCAGGA AGCCTCCCCT
GCCTCCCATG GCCCCGACCA GCTCACATCG GCCATGTCCT GCCTGCTCGT GTTTCAAGTG
GGGATGAGTC TTATTCCTCA ACCTTTGAGA GTTTGAATGG GGTCTGAGAC TCACTTGTGC
TCTAGACAGC ACCTGGCTCA GGGCTATACT CTGACATGAA TAGAGGTTAA GTATTTTTTG
AGAAAGCATT TTATAGTTTC CAAAAACTGT CAGTGCCAAC TCTCTTGTGG AAAGGAGATG
GAGAGGCCTG AAGGTTTGAA
<span style="color:green;">K</span>
AATGGACTCT GGCCTCATTC ACAACCAGGT TGGAGGTTTG GCTCTGCCAG TTATGAGCTG
AGTGACTTTG GGGAAGGGAC TACCACCTCC TGGCCTCAGT TTCTTCAACT ATAAAATGGG
AATAATGGTA CCGCCTTTGT GGGTCTGCTG TGAGGGCTCA GGGCTCAGCA TGGTTCTGGG
CACCCAGCAA GCCACCTGTC TGCATATCAT CACCCATTGT GCTGACCTCC CTGTGAAGCA
GGGGTTCATT TGACAGATGG GGAAACTTGG GTCCATGCCA GGGTGCTGAG CGGGGAAGGC
TGGGCAGGAG CAAGACCTCT CAAGCCTCTG CTGATGGTAA ATTGAGGCAA GATACCCACG
TAGCCTCCAG CTTCAAGGGT GCCCCAGATA AATCAGACAG GTTGTGGGAG GGGGCTGGCA
GGGCAGTGTG CTCACTCCCC CAGAGCCCCC TTCCTGGCCC CTCACCACCC CCACCCCAAG
CCTGATCTGA GGACAGCAGC
</PRE>
</div></DIV><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="resource"><strong>NCBI Resource Links</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><TABLE width="50%" ><TR valign="top"><td ><TABLE ><TR style="text-align:left"><TH bgcolor="silver" colspan="1">Submitter-Referenced</TH></TR><TR style="text-align:left"><td bgcolor="#f0f0f0">GenBank</td></TR><TR style="text-align:left"><td bgcolor="#dfdfdf"><a href="http://www.ncbi.nlm.nih.gov/nuccore/NT_011520">NT_011520</a>
<a href="http://www.ncbi.nlm.nih.gov/nuccore/ABBA01055293">ABBA01055293</a>
</td></TR></TABLE></td><td ><TABLE ><TR ><TH bgcolor="silver" colspan="0">dbSNP Blast Analysis</TH></TR><TR ></TR><TR ></TR></TABLE></td><td ></td><td ></td><td ></td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="Diversity"><strong>Population Diversity (in rs orientation)</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><BR><TABLE id="Diversity"><TR ><TH bgcolor="silver"> </TH><TH bgcolor="silver" colspan="4">Sample Ascertainment</TH><TH bgcolor="silver" colspan="4">Genotype Detail</TH><TH bgcolor="silver" colspan="3">Alleles</TH></TR><TR ><TH bgcolor="silver">ss#</TH><TH bgcolor="silver">Population</TH><TH bgcolor="silver">Individual<BR>Group</TH><TH bgcolor="silver">Chrom.<BR>Sample Cnt.<br></TH><TH bgcolor="silver">Source</TH><TH bgcolor="silver">G/G<BR><IMG border="0" height="6" src="gif/orange.gif" width="20"></TH><TH bgcolor="silver">G/T<BR><IMG border="0" height="6" src="gif/green.gif" width="20"></TH><TH bgcolor="silver">T/T<BR><IMG border="0" height="6" src="gif/blue.gif" width="20"></TH><TH bgcolor="silver">HWP</TH><TH bgcolor="silver">G<BR><IMG border="0" height="6" src="gif/orange.gif" width="20"></TH><TH bgcolor="silver">T<BR><IMG border="0" height="6" src="gif/blue.gif" width="20"></TH></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss138346539">ss138346539</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12269">ENSEMBL_Watson</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss143491661">ss143491661</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12632">ENSEMBL_Venter</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss238051055">ss238051055</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=13148">pilot_1_CEU_low_coverage_panel</a></td><td style="text-align:left"></td><td style="text-align:left"> 120</td><td style="text-align:left">AF</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 0.725</span></td><td ><span size="-1"> 0.275</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="58"><IMG border="0" height="6" src="gif/blue.gif" width="22"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss244174526">ss244174526</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=13149">pilot_1_CHB+JPT_low_coverage_panel</a></td><td style="text-align:left"></td><td style="text-align:left"> 120</td><td style="text-align:left">AF</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 0.675</span></td><td ><span size="-1"> 0.325</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="54"><IMG border="0" height="6" src="gif/blue.gif" width="26"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss41545403">ss41545403</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1409">HapMap-CEU</a></td><td style="text-align:left">European</td><td style="text-align:left"> 222</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.486</span></td><td style="text-align:left"><span size="-1"> 0.414</span></td><td style="text-align:left"><span size="-1"> 0.099</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.694</span></td><td ><span size="-1"> 0.306</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="58.32"><IMG border="0" height="6" src="gif/green.gif" width="49.68"><IMG border="0" height="6" src="gif/blue.gif" width="11.88"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="55.52"><IMG border="0" height="6" src="gif/blue.gif" width="24.48"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1410">HapMap-HCB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 86</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.372</span></td><td style="text-align:left"><span size="-1"> 0.395</span></td><td style="text-align:left"><span size="-1"> 0.233</span></td><td ><span size="-1"> 0.251</span></td><td ><span size="-1"> 0.570</span></td><td ><span size="-1"> 0.430</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="44.64"><IMG border="0" height="6" src="gif/green.gif" width="47.4"><IMG border="0" height="6" src="gif/blue.gif" width="27.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="45.6"><IMG border="0" height="6" src="gif/blue.gif" width="34.4"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1411">HapMap-JPT</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 166</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.398</span></td><td style="text-align:left"><span size="-1"> 0.518</span></td><td style="text-align:left"><span size="-1"> 0.084</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.657</span></td><td ><span size="-1"> 0.343</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="47.76"><IMG border="0" height="6" src="gif/green.gif" width="62.16"><IMG border="0" height="6" src="gif/blue.gif" width="10.08"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="52.56"><IMG border="0" height="6" src="gif/blue.gif" width="27.44"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1412">HapMap-YRI</a></td><td style="text-align:left">Sub-Saharan African</td><td style="text-align:left"> 224</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.982</span></td><td style="text-align:left"><span size="-1"> 0.018</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.991</span></td><td ><span size="-1"> 0.009</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="117.84"><IMG border="0" height="6" src="gif/green.gif" width="2.16"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="79.28"><IMG border="0" height="6" src="gif/blue.gif" width="0.72"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12156">HAPMAP-ASW</a></td><td style="text-align:left"></td><td style="text-align:left"> 98</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.735</span></td><td style="text-align:left"><span size="-1"> 0.245</span></td><td style="text-align:left"><span size="-1"> 0.020</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.857</span></td><td ><span size="-1"> 0.143</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="88.2"><IMG border="0" height="6" src="gif/green.gif" width="29.4"><IMG border="0" height="6" src="gif/blue.gif" width="2.4"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="68.56"><IMG border="0" height="6" src="gif/blue.gif" width="11.44"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12157">HAPMAP-CHB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 80</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.300</span></td><td style="text-align:left"><span size="-1"> 0.550</span></td><td style="text-align:left"><span size="-1"> 0.150</span></td><td ><span size="-1"> 0.439</span></td><td ><span size="-1"> 0.575</span></td><td ><span size="-1"> 0.425</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="36"><IMG border="0" height="6" src="gif/green.gif" width="66"><IMG border="0" height="6" src="gif/blue.gif" width="18"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="46"><IMG border="0" height="6" src="gif/blue.gif" width="34"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12158">HAPMAP-CHD</a></td><td style="text-align:left"></td><td style="text-align:left"> 166</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.494</span></td><td style="text-align:left"><span size="-1"> 0.373</span></td><td style="text-align:left"><span size="-1"> 0.133</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.681</span></td><td ><span size="-1"> 0.319</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="59.28"><IMG border="0" height="6" src="gif/green.gif" width="44.76"><IMG border="0" height="6" src="gif/blue.gif" width="15.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="54.48"><IMG border="0" height="6" src="gif/blue.gif" width="25.52"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12159">HAPMAP-GIH</a></td><td style="text-align:left"></td><td style="text-align:left"> 174</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.241</span></td><td style="text-align:left"><span size="-1"> 0.471</span></td><td style="text-align:left"><span size="-1"> 0.287</span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.477</span></td><td ><span size="-1"> 0.523</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="28.92"><IMG border="0" height="6" src="gif/green.gif" width="56.52"><IMG border="0" height="6" src="gif/blue.gif" width="34.44"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="38.16"><IMG border="0" height="6" src="gif/blue.gif" width="41.84"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12160">HAPMAP-LWK</a></td><td style="text-align:left"></td><td style="text-align:left"> 178</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.978</span></td><td style="text-align:left"><span size="-1"> 0.022</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.989</span></td><td ><span size="-1"> 0.011</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="117.36"><IMG border="0" height="6" src="gif/green.gif" width="2.64"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="79.12"><IMG border="0" height="6" src="gif/blue.gif" width="0.88"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12161">HAPMAP-MEX</a></td><td style="text-align:left"></td><td style="text-align:left"> 100</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.200</span></td><td style="text-align:left"><span size="-1"> 0.600</span></td><td style="text-align:left"><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.200</span></td><td ><span size="-1"> 0.500</span></td><td ><span size="-1"> 0.500</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="24"><IMG border="0" height="6" src="gif/green.gif" width="72"><IMG border="0" height="6" src="gif/blue.gif" width="24"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="40"><IMG border="0" height="6" src="gif/blue.gif" width="40"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12162">HAPMAP-MKK</a></td><td style="text-align:left"></td><td style="text-align:left"> 286</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.825</span></td><td style="text-align:left"><span size="-1"> 0.175</span></td><td style="text-align:left"><span size="-1"> </span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.913</span></td><td ><span size="-1"> 0.087</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="99"><IMG border="0" height="6" src="gif/green.gif" width="21"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="73.04"><IMG border="0" height="6" src="gif/blue.gif" width="6.96"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=12163">HAPMAP-TSI</a></td><td style="text-align:left"></td><td style="text-align:left"> 176</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.330</span></td><td style="text-align:left"><span size="-1"> 0.466</span></td><td style="text-align:left"><span size="-1"> 0.205</span></td><td ><span size="-1"> 0.655</span></td><td ><span size="-1"> 0.562</span></td><td ><span size="-1"> 0.438</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="39.6"><IMG border="0" height="6" src="gif/green.gif" width="55.92"><IMG border="0" height="6" src="gif/blue.gif" width="24.6"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="44.96"><IMG border="0" height="6" src="gif/blue.gif" width="35.04"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss69274569">ss69274569</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1409">HapMap-CEU</a></td><td style="text-align:left">European</td><td style="text-align:left"> 120</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.517</span></td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.083</span></td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> 0.717</span></td><td ><span size="-1"> 0.283</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="62.04"><IMG border="0" height="6" src="gif/green.gif" width="48"><IMG border="0" height="6" src="gif/blue.gif" width="9.96"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="57.36"><IMG border="0" height="6" src="gif/blue.gif" width="22.64"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1410">HapMap-HCB</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 90</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.378</span></td><td style="text-align:left"><span size="-1"> 0.222</span></td><td ><span size="-1"> 0.150</span></td><td ><span size="-1"> 0.589</span></td><td ><span size="-1"> 0.411</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="48"><IMG border="0" height="6" src="gif/green.gif" width="45.36"><IMG border="0" height="6" src="gif/blue.gif" width="26.64"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="47.12"><IMG border="0" height="6" src="gif/blue.gif" width="32.88"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1411">HapMap-JPT</a></td><td style="text-align:left">Asian</td><td style="text-align:left"> 90</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 0.400</span></td><td style="text-align:left"><span size="-1"> 0.511</span></td><td style="text-align:left"><span size="-1"> 0.089</span></td><td ><span size="-1"> 0.403</span></td><td ><span size="-1"> 0.656</span></td><td ><span size="-1"> 0.344</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="48"><IMG border="0" height="6" src="gif/green.gif" width="61.32"><IMG border="0" height="6" src="gif/blue.gif" width="10.68"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="52.48"><IMG border="0" height="6" src="gif/blue.gif" width="27.52"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=1412">HapMap-YRI</a></td><td style="text-align:left">Sub-Saharan African</td><td style="text-align:left"> 120</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> 1.000</span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td > </td><td ><span size="-1"> 1.000</span></td><td ><span size="-1"> </span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="120"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="80"><IMG border="0" height="6" src="gif/blue.gif" width="0"></td><td > </td></TR><TR valign="bottom"><td style="text-align:left"><a href="snp_ss.cgi?ss=ss96097413">ss96097413</a></td><td style="text-align:left"><a href="snp_viewTable.cgi?pop=10098">J. Craig Venter</a></td><td style="text-align:left"></td><td style="text-align:left"> 2</td><td style="text-align:left">IG</td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> </span></td><td style="text-align:left"><span size="-1"> 1.000</span></td><td > </td><td ><span size="-1"> </span></td><td ><span size="-1"> 1.000</span></td><td > </td></TR><TR valign="center"><td ></td><td ></td><td ></td><td ></td><td ></td><td align="center" colspan="3"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/green.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="120"></td><td > </td><td align="center" colspan="2"><IMG border="0" height="6" src="gif/orange.gif" width="0"><IMG border="0" height="6" src="gif/blue.gif" width="80"></td><td > </td></TR></TABLE><BR><TABLE ><TR ><TH bgcolor="silver">Summary</TH><TH bgcolor="silver">Average<BR>Het.+/- std err:</TH><TH bgcolor="silver">Individual<BR>Count</TH><TH bgcolor="silver">Founders<BR>Count</TH><TH bgcolor="silver">Individual<BR>Overlap</TH><TH bgcolor="silver">Genotype<BR>Conflict</TH><TH bgcolor="silver">Additional Freq. Data</TH></TR><TR ><td ></td><td ><span size="-1">0.414</span><span color="gray" size="-3">+/-0.189</span></td><td >1210</td><td >1005</td><td >270</td><td >0</td><td ><a href="http://alfred.med.yale.edu/alfred/recordinfod.asp?UNID=SI645266D">ALFRED: The Allele Frequency Database</a></td></TR></TABLE><BR><TABLE WIDTH="75%" CELLPADDING="0" CELLSPACING="2" BORDER="0" BGCOLOR="#FFFFFF" ><TR ><td WIDTH="1%" BGCOLOR="#315399"> </td>
<td class="H4" style="text-align:left;background-color:#CCCCFF;width;91%"><a name="validation"><strong>Validation Summary:</strong></a></td>
<td BGCOLOR="#CCCCFF" width="4%"><a href="#maintab"><IMG width="14" alt="back to top" src="gif/arrowup.gif" height="14" border="0"></a></td>
</TR></TABLE><TABLE id="Validation"><TH bgcolor="silver"><a href="javascript:openPopup("snp_legend.cgi?legend=validation")"><strong>Validation status</strong></a></TH><TH bgcolor="silver">Marker displays<BR> Mendelian segregation</TH><TH bgcolor="silver">PCR results confirmed<BR> in multiple reactions</TH><TH bgcolor="silver">Homozygotes detected<BR>in individual genotype data</TH><TR ><td style="text-align:left"><IMG border="0" height="17" src="gif/val_cluster.gif" alt="byCluster" width="15"><IMG border="0" height="17" src="gif/val_freq.gif" alt="byFreq" width="15"><IMG border="0" height="17" src="gif/val_2hit.gif" alt="with2hit" width="15"><IMG border="0" height="17" src="gif/val_hapmap.gif" alt="withHapMapFreq" width="15"><IMG border="0" height="17" src="gif/val_1000G.gif" alt="With1000GenomeData" width="15"><TABLE ><TR valign="top"><td ></td></TR><TR valign="top"><td ><span size="-1"><I>DoubleHit found by: </I> <a href="snp_viewTable.cgi?h=BCM_SSAHASNP">BCM_SSAHASNP</a></span></td></TR></TABLE></td><td style="text-align:left">UNKNOWN</td><td style="text-align:left">UNKNOWN</td><td style="text-align:left">UNKNOWN</td></TR></TABLE><!--start printTemplateBottom-->
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