diff --git a/.github/workflows/linting_and_testing.yml b/.github/workflows/linting_and_testing.yml index abac88c..5004d4d 100644 --- a/.github/workflows/linting_and_testing.yml +++ b/.github/workflows/linting_and_testing.yml @@ -10,6 +10,7 @@ on: - 'LICENSE' - 'setup.py' - 'README.md' + - 'CITATION.cff' - 'references.jsonld' - '**/docs/**' - '**/json_schemas/**' diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..75f1542 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,84 @@ +# YAML 1.2 +--- +abstract: "BioExcel Building Blocks (BioBB) library. BioBB’s are built as Python wrappers to provide an interoperable architecture. BioBB’s have been integrated in a chain of usual software management tools to generate data ontologies, documentation, installation packages, software containers and ways of integration with workflow managers, that make them usable in most computational environments." +authors: + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Andrio" + given-names: "Pau" + orcid: "https://orcid.org/0000-0003-2116-3880" + - + affiliation: "Institute for Research in Biomedicine (IRB Barcelona)" + family-names: "Hospital" + given-names: "Adam" + orcid: "https://orcid.org/0000-0002-8291-8071" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Conejero" + given-names: "Javier" + orcid: "https://orcid.org/0000-0001-6401-6229" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Jordà" + given-names: "Luis" + orcid: "https://orcid.org/0000-0002-9407-9703" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Del Pino" + given-names: "Marc" + orcid: "https://orcid.org/0000-0001-5565-7577" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Laia" + given-names: "Codó" + orcid: "https://orcid.org/0000-0002-6797-8746" + - + affiliation: "School of computer Science, the University of Manchester" + family-names: Werkhoven + given-names: Ben + name-particle: van + orcid: "https://orcid.org/0000-0002-7508-3272" + - + affiliation: "University of Manchester (UOM)" + family-names: "Soiland-Reyes" + given-names: "Stian" + orcid: "https://orcid.org/0000-0001-9842-9718" + - + affiliation: "University of Manchester (UOM)" + family-names: "Goble" + given-names: "Carole" + orcid: "https://orcid.org/0000-0003-1219-2137" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Lezzi" + given-names: "Daniele" + orcid: "https://orcid.org/0000-0001-5081-7244" + - + affiliation: "Barcelona Supercomputing Center (BSC)" + family-names: "Rosa M" + given-names: "Badia" + orcid: "https://orcid.org/0000-0003-2941-5499" + - + affiliation: "Institute for Research in Biomedicine (IRB Barcelona), University of Barcelona (UB)" + family-names: "Orozco" + given-names: "Modesto" + orcid: "https://orcid.org/0000-0002-8608-3278" + - + affiliation: "Barcelona Supercomputing Center (BSC), University of Barcelona (UB)" + family-names: "Gelpí" + given-names: "Josep Ll." + orcid: "https://orcid.org/0000-0002-0566-7723" + email: "gelpi@ub.edu" + +cff-version: "1.2.0" +date-released: "2019-09-10" +keywords: + - "BioExcel" + - "BioBB" + - "Bioinformatics" + - "Computational Biology" + - "Biomolecular Workflows" +license: "Apache-2.0" +message: "If you use this software, please cite it using these metadata." +repository-code: "https://github.com/bioexcel/biobb" +title: "BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows" diff --git a/README.md b/README.md index 08778ee..c733a5f 100644 --- a/README.md +++ b/README.md @@ -22,6 +22,12 @@ [![](https://img.shields.io/github/last-commit/bioexcel/biobb_flexserv?label=Last%20Commit)](https://github.com/bioexcel/biobb_flexserv/commits/master) [![](https://img.shields.io/github/issues/bioexcel/biobb_flexserv.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_flexserv/issues/) +[![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu) +[![](https://www.bestpractices.dev/projects/8847/badge)](https://www.bestpractices.dev/projects/8847) + +[](https://bestpractices.coreinfrastructure.org/projects/8847/badge) + +[//]: # (The previous line invisible link is for compatibility with the howfairis script https://github.com/fair-software/howfairis-github-action/tree/main wich uses the old bestpractices URL) # biobb_flexserv @@ -93,8 +99,8 @@ The command list and specification can be found at the [Command Line documentati ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728), EU HORIZON-EUROHPC-JU [101093290](https://cordis.europa.eu/project/id/101093290)). -* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/) -* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) +* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details. diff --git a/biobb_flexserv/docs/source/conf.py b/biobb_flexserv/docs/source/conf.py index 9de347a..16eb4e1 100644 --- a/biobb_flexserv/docs/source/conf.py +++ b/biobb_flexserv/docs/source/conf.py @@ -72,7 +72,7 @@ # General information about the project. project = u'biobb_flexserv' -copyright = u'2023, Bioexcel Project' +copyright = u'2024, Bioexcel Project' author = u'Bioexcel Project' # The version info for the project you're documenting, acts as replacement for diff --git a/biobb_flexserv/docs/source/readme.md b/biobb_flexserv/docs/source/readme.md index 08778ee..c733a5f 100644 --- a/biobb_flexserv/docs/source/readme.md +++ b/biobb_flexserv/docs/source/readme.md @@ -22,6 +22,12 @@ [![](https://img.shields.io/github/last-commit/bioexcel/biobb_flexserv?label=Last%20Commit)](https://github.com/bioexcel/biobb_flexserv/commits/master) [![](https://img.shields.io/github/issues/bioexcel/biobb_flexserv.svg?color=brightgreen&label=Issues)](https://GitHub.com/bioexcel/biobb_flexserv/issues/) +[![fair-software.eu](https://img.shields.io/badge/fair--software.eu-%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F%20%20%E2%97%8F-green)](https://fair-software.eu) +[![](https://www.bestpractices.dev/projects/8847/badge)](https://www.bestpractices.dev/projects/8847) + +[](https://bestpractices.coreinfrastructure.org/projects/8847/badge) + +[//]: # (The previous line invisible link is for compatibility with the howfairis script https://github.com/fair-software/howfairis-github-action/tree/main wich uses the old bestpractices URL) # biobb_flexserv @@ -93,8 +99,8 @@ The command list and specification can be found at the [Command Line documentati ### Copyright & Licensing This software has been developed in the [MMB group](http://mmb.irbbarcelona.org) at the [BSC](http://www.bsc.es/) & [IRB](https://www.irbbarcelona.org/) for the [European BioExcel](http://bioexcel.eu/), funded by the European Commission (EU H2020 [823830](http://cordis.europa.eu/projects/823830), EU H2020 [675728](http://cordis.europa.eu/projects/675728), EU HORIZON-EUROHPC-JU [101093290](https://cordis.europa.eu/project/id/101093290)). -* (c) 2015-2023 [Barcelona Supercomputing Center](https://www.bsc.es/) -* (c) 2015-2023 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) +* (c) 2015-2024 [Barcelona Supercomputing Center](https://www.bsc.es/) +* (c) 2015-2024 [Institute for Research in Biomedicine](https://www.irbbarcelona.org/) Licensed under the [Apache License 2.0](https://www.apache.org/licenses/LICENSE-2.0), see the file LICENSE for details.