pr-tests.yml

name: PR Tests

# Trigger the workflow on pull request events
on:
  pull_request:
    types: [opened, synchronize, reopened]

jobs:
  pr_test:
    strategy:
      matrix:
        os: [self-hosted]
        python-version: ["3.10"]
    runs-on: ${{ matrix.os }}
    steps:
      - name: Check out repository code
        uses: actions/checkout@v4

      - run: echo "Repository -> ${{ github.repository }}"
      - run: echo "Branch -> ${{ github.ref }}"
      - run: echo "Trigger event -> ${{ github.event_name }}"
      - run: echo "Runner OS -> ${{ runner.os }}"

      - name: List files in the repository
        run: |
          ls ${{ github.workspace }}

      - name: Remove all micromamba installations
        run: |
          rm -rf $HOME/.bash_profile $HOME/.conda $HOME/micromamba $HOME/micromamba-bin 2>/dev/null
          touch $HOME/.bash_profile

      - name: setup-micromamba
        uses: mamba-org/setup-micromamba@v2.0.0
        with:
          generate-run-shell: true
          micromamba-version: '2.0.2-2'
          post-cleanup: 'all'
          init-shell: bash
          environment-file: .github/env.yaml
          create-args: >-
            python=${{ matrix.python-version }}
            pytest
            pytest-cov
            pytest-html
            flake8
            pip

      - name: List installed package versions
        shell: bash -l {0}
        run: micromamba list

      - name: Checkout biobb_common
        uses: actions/checkout@v4
        with:
          repository: bioexcel/biobb_common
          path: './biobb_common'

      - name: Run tests
        shell: bash -l {0}
        run: |
          # Ignoring docker and singularity tests
          export PYTHONPATH=.:./biobb_common:$PYTHONPATH

          # Create directory for tests reports
          mkdir -p ./reports/junit

          # Production one
          pytest biobb_haddock/test/unitests/ --ignore-glob=*container.py --ignore-glob=*docker.py --ignore-glob=*singularity.py

      # Notify user about test results
      - name: Comment on PR
        if: always() # This ensures the step runs even if tests fail
        uses: actions/github-script@v6
        with:
          script: |
            const { payload, repo } = context; // Access GitHub context
            const prNumber = payload.pull_request.number;
            const jobStatus = '${{ job.status }}'; // Get job status (success/failure)
            const testStatus = jobStatus === 'success' ? '✅ Tests Passed!' : '❌ Tests Failed.';
            
            await github.rest.issues.createComment({
              owner: repo.owner,
              repo: repo.repo,
              issue_number: prNumber,
              body: `**Test Results for PR #${prNumber}**\n\n${testStatus}`
            });