diff --git a/README.md b/README.md index 589d4666..cdbc2d78 100644 --- a/README.md +++ b/README.md @@ -364,6 +364,10 @@ may be controlled with the `LOGURU_LEVEL` environment variable. ## Changelog +### 0.9.0 (coming soon) + +- update to [bioimageio.spec 0.5.4.2](https://github.com/bioimage-io/spec-bioimage-io/blob/main/changelog.md#bioimageiospec-0542) + ### 0.8.0 - breaking: removed `decimals` argument from bioimageio CLI and `bioimageio.core.commands.test()` diff --git a/dev/env-dev.yaml b/dev/env-dev.yaml index 13378376..f92d2f66 100644 --- a/dev/env-dev.yaml +++ b/dev/env-dev.yaml @@ -5,7 +5,7 @@ channels: - nodefaults - pytorch dependencies: - - bioimageio.spec==0.5.4.1 + - bioimageio.spec==0.5.4.2 - black # - crick # currently requires python<=3.9 - h5py @@ -26,7 +26,6 @@ dependencies: - psutil - pydantic - pydantic-settings - - pyright - pytest - pytest-cov # - python=3.11 # removed diff --git a/dev/env-full.yaml b/dev/env-full.yaml index a9dc0132..3d95030c 100644 --- a/dev/env-full.yaml +++ b/dev/env-full.yaml @@ -4,7 +4,7 @@ channels: - nodefaults - pytorch dependencies: - - bioimageio.spec==0.5.4.1 + - bioimageio.spec==0.5.4.2 - black # - careamics # TODO: add careamics for model testing (currently pins pydantic to <2.9) - cellpose # for model testing @@ -28,7 +28,7 @@ dependencies: - psutil - pydantic - pydantic-settings - - pyright + - pyright==1.1.396 - pytest - pytest-cov - python=3.11 # 3.12 not supported by cellpose->fastremap diff --git a/dev/env-gpu.yaml b/dev/env-gpu.yaml index 7fc2123c..968f25ba 100644 --- a/dev/env-gpu.yaml +++ b/dev/env-gpu.yaml @@ -4,7 +4,7 @@ channels: - conda-forge - nodefaults dependencies: - - bioimageio.spec==0.5.4.1 + - bioimageio.spec==0.5.4.2 - black - cellpose # for model testing # - crick # currently requires python<=3.9 @@ -26,7 +26,7 @@ dependencies: - psutil - pydantic<2.9 - pydantic-settings - - pyright + - pyright==1.1.396 - pytest - pytest-cov - python=3.11 diff --git a/dev/env-py38.yaml b/dev/env-py38.yaml index 6fc6597a..f476f352 100644 --- a/dev/env-py38.yaml +++ b/dev/env-py38.yaml @@ -5,7 +5,7 @@ channels: - nodefaults - pytorch dependencies: - - bioimageio.spec==0.5.4.1 + - bioimageio.spec==0.5.4.2 - black - crick # uncommented - h5py @@ -26,7 +26,6 @@ dependencies: - psutil - pydantic - pydantic-settings - - pyright - pytest - pytest-cov - python=3.8 # changed diff --git a/setup.py b/setup.py index f4e975a5..5460d3a8 100644 --- a/setup.py +++ b/setup.py @@ -30,7 +30,7 @@ ], packages=find_namespace_packages(exclude=["tests"]), install_requires=[ - "bioimageio.spec ==0.5.4.1", + "bioimageio.spec ==0.5.4.2", "h5py", "imagecodecs", "imageio>=2.10",