Represent '-1' indices as empty strings in StringArrayEncoding
#1052
test_and_deploy.yml
on: pull_request
Build CCD and wheel for reusing it in several CI jobs
10m 58s
Check code style
27s
Generate wheels matrix
11s
Build source distribution
37s
Test interfaces to databases and applications
4m 42s
Test interface to Muscle 5
1m 3s
Build documentation
4m 56s
Matrix: Build & Test
Upload documentation to GitHub Releases and documentation website
0s
Upload package to GitHub Releases & PyPI
0s
Annotations
18 errors and 13 warnings
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Build & Test (cp313-win_amd64, windows-latest)
Process completed with exit code 1.
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Build & Test (cp313-win_amd64, windows-latest)
Command pytest D:\a\biotite\biotite --durations=50 --ignore=D:\a\biotite\biotite//tests//sequence//align//test_statistics.py --ignore=D:\a\biotite\biotite//tests//application --ignore=D:\a\biotite\biotite//tests//interface --ignore=D:\a\biotite\biotite//tests//database --ignore=D:\a\biotite\biotite//tests//test_doctest.py --ignore=D:\a\biotite\biotite//tests//test_modname.py
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Build & Test (cp311-win_amd64, windows-latest)
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Build & Test (cp311-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp312-win_amd64, windows-latest)
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Build & Test (cp312-win_amd64, windows-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp311-macosx_x86_64, macos-latest)
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Build & Test (cp311-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
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Build & Test (cp313-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp312-macosx_x86_64, macos-latest)
The operation was canceled.
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Build & Test (cp312-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp313-macosx_x86_64, macos-latest)
The operation was canceled.
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Build & Test (cp313-macosx_x86_64, macos-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The operation was canceled.
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Build & Test (cp311-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The operation was canceled.
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Build & Test (cp312-manylinux_x86_64, ubuntu-latest)
The strategy configuration was canceled because "test-and-build.cp313-win_amd64_windows-l" failed
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Test interface to Muscle 5
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Test interfaces to databases and applications
warning libmamba [dssp-4.5.6-py312h36e4239_2] The following files were already present in the environment:
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Test interfaces to databases and applications
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Test interfaces to databases and applications
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
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Test interfaces to databases and applications
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Test interfaces to databases and applications
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Build documentation
warning libmamba You are using 'pip' as an additional package manager.
Be aware that packages installed with 'pip' are managed independently from 'conda-forge' channel.
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Build documentation
warning libmamba [dssp-4.5.6-py312h36e4239_2] The following files were already present in the environment:
- share/libcifpp/mmcif_ddl.dic
- share/libcifpp/mmcif_ma.dic
- share/libcifpp/mmcif_pdbx.dic
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Build documentation
warning libmamba [ossuuid-1.6.2-h5888daf_1001] The following files were already present in the environment:
- lib/libuuid.a
- lib/libuuid.so
- lib/pkgconfig/uuid.pc
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Build documentation
warning libmamba 'repo.anaconda.com', a commercial channel hosted by Anaconda.com, is used.
warning libmamba Please make sure you understand Anaconda Terms of Services.
warning libmamba See: https://legal.anaconda.com/policies/en/
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Build documentation
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Build documentation
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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