Last Cleansing

[nils-schmitt]

Here we should collect all the things, we see in the code check that are most certainly in the end product, but not desired.
Feel free to contribute!

Database:

• Delete all admin users (except "admin")
• Clean the DB one last time of unwanted PJs / Traces / Cohorts
• Traces with cohorts
• all traces have valid cohorts

Code:

• Universal case convention for buttons
• universal capitalization convention for html files
• Remove all print()
• check settings.py
• remove migrations from comparator
• delete tests
• activity_labeler 76: false typing
• clean post_processing
• Snomed integration

Optional:

• reset ids?

[PitButtchereit]

Buttons should have a universal case convention.

[PitButtchereit]

module_metrics_analyzer.__rate_timestamp_correctness should use the liear_prob directly from the query_gpt() function

I've refactored this already on my branch 👍 New code now looks like this.

timestamp_correctness, linear_probability = u.query_gpt(messages, return_linear_probability=True, top_logprobs=1)
and I changed the return value of the function accordingly.

[PitButtchereit]

This basically means having a final database image.

[nils-schmitt]

Remove all print statements

[FR-SON]

add valid cohorts for all traces remaining in the db

[FR-SON]

In settings.py there are these two lines that should be addressed:

# SECURITY WARNING: keep the secret key used in production secret!
SECRET_KEY = "django-insecure-$u00r=^xd*m1ggjgzwj%2o2$h=34k358#imaxe22w@stk_aptt"

# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True

[FR-SON]

Remove migrations directory from trace:comparator. It is empty aside from an init file so it should not be required. Especially because all models are located in the extraction app.

[nils-schmitt]

Push web scraping poc, with big future use annotation

[PitButtchereit]

Fix ResultViewTests

How thou???

Delete

[nils-schmitt]

Clean TTE html files

[nils-schmitt]

Make html files similar regarding Capitalization of words

[FR-SON]

Line 76 in module_activity_labler.py: user_message: List[str] = patient_journey_numberedhas wrong typing, should be str.

The functions inside post_processing in module_time_extractor.py use a variable df that shadows a variable from outer scope. It should be changed to _df inside those functions. Additionally the column parameter is typed as a pd.Series, but is actually a str

[tkv29]