filter variants integration test passes #402

	name: Code checks

	on:
	push:
	workflow_call:

	jobs:
	lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

	- name: Install uv
	uses: astral-sh/setup-uv@bd01e18f51369d5a26f1651c3cb451d3417e3bba # v6.3.1
	with:
	python-version: "3.11"
	enable-cache: "true"

	- name: Ruff format
	run: uvx ruff@0.15.4 format --check --diff permutect/

	- name: Ruff check
	run: uvx ruff@0.15.4 check permutect/

	test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

	- uses: prefix-dev/setup-pixi@a0af7a228712d6121d37aba47adf55c1332c9c2e # v0.9.4
	with:
	cache: true

	- name: Run unit tests
	run: pixi run test-unit

	docker:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

	- uses: docker/setup-buildx-action@b5ca514318bd6ebac0fb2aedd5d36ec1b5c232a2 # v3.10.0

	- name: Build Docker image
	uses: docker/build-push-action@14487ce63c7a62a4a324b0bfb37086795e31c6c1 # v6.16.0
	with:
	context: .
	push: false
	cache-from: type=gha
	cache-to: type=gha,mode=max

Navigation Menu